New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_1	1 =	0 (0.000)	33 (0.630) +CAAAATGAATCAATCTTTACTTTCT	23/246	0.8	100%	intergenic (–/‑286)	–/Xen14_00001	–/hypothetical protein
	?	Xen14_25	73164 =	NA (NA)					intergenic (‑334/–)	Xen14_02638/–	hypothetical protein/–

AAAAATCGACACCTCCATTTAATTGCCTTTCCAGAGCCACAGCTCTTCTTTCCATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAG‑CCGGACTCCGGTTTTTTTGTGAACCCGTCGGCTATTTCA‑‑‑‑  >  Xen14_25/73016‑73240                                                                                                                                                     |                                                                                  aaaaaTCGACACCTCCATTTAATTGCCTTTCCAGAGCCACAGCTCTTCTTTCCATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATa                                                                                  >  1:2860260/1‑150 (MQ=255)    aaTCGACACCTCCATTTGATTGCCTTTCCAGAGCCACAGCTCTTCTTTCCATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATaaca                                                                               >  1:1136667/1‑150 (MQ=255)       cGACACCTCCATTTAATTGCCTTTCCAGAGCCACAGCTCTTCTTTCCATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATaacaaac                                                                            <  1:3228103/150‑1 (MQ=255)       cGACACCTCCATTTAATTGCCTTTCCAGAGCCACAGCTCTTCTTTCCATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATaacaaac                                                                            <  1:1244704/150‑1 (MQ=255)       cGACACCTCCATTTAATTGCCTTTCCAGAGCCACAGCTCTTCTTTCCATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATaacaaac                                                                            <  1:3228104/150‑1 (MQ=255)       cGACACCTCCATTTAATTGCCTTTCCAGAGCCACAGCTCTTCTTTCCATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATaacaaac                                                                            <  1:3228105/150‑1 (MQ=255)       cGACACCTCCATTTAATTGCCTTTCCAGAGCCACAGCTCTTCTTTCCATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATaacaaac                                                                            >  1:1924880/1‑150 (MQ=255)                cATTTAATTGCCTTTCCAGAGCCACAGCTCTTCTTTCCATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATg                                                                   >  1:1106597/1‑150 (MQ=255)                 aTTTAATTGCCTTTCCAGAGCCACAGCTCTTCTTTCCATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCAt                                                                                   <  1:1671984/133‑1 (MQ=255)                      aTTGCCTTTCCAGAGCCACAGCTCTTCTTTCCATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGa                                                             <  1:1508415/150‑1 (MQ=255)                      aTTGCCTTTCCAGAGCCACAGCTCTTCTTTCCATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGa                                                             <  1:1508418/150‑1 (MQ=255)                      aTTGCCTTTCCAGAGCCACAGCTCTTCTTTCCATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGa                                                             <  1:1508412/150‑1 (MQ=255)                      aTTGCCTTTCCAGAGCCACAGCTCTTCTTTCCATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGa                                                             <  1:1432491/150‑1 (MQ=255)                                    gCCACAGCTCTTCTTTCCATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGa                                               >  1:3115093/1‑150 (MQ=255)                                         aGCTCTTCTTTCCATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAG‑CCgg                                         <  1:2294745/150‑1 (MQ=255)                                            tcttctTTCCATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAG‑CCGGACt                                      <  1:3645555/150‑1 (MQ=255)                                                   tCCATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAGTCCGG‑CTCCGGttt                               <  1:3481738/150‑1 (MQ=255)                                                    ccATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAG‑CCGGACTCCGGtttt                              <  1:418147/150‑1 (MQ=255)                                                    ccATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAG‑CCGGACTCCGGtttt                              <  1:418148/150‑1 (MQ=255)                                                    ccATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAG‑CCGGACTCCGGtttt                              <  1:418151/150‑1 (MQ=255)                                                    ccATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTCATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAGTCCGG‑CTCCGGtttt                              <  1:1229703/150‑1 (MQ=25)                                                    ccATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTCATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAGTCCGG‑CTCCGGtttt                              <  1:1229702/150‑1 (MQ=25)                                                     cATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAG‑CCGGACTCCGGttttt                             >  1:665349/1‑150 (MQ=255)                                                     cATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAG‑CCGGACTCCGGttttt                             <  1:1091709/150‑1 (MQ=255)                                                         cGATTCTCACGCCCCAAGAGCCTAGCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTAGGAAATATTCATTCCAAACACAGGGAGTCATAACAAACAGCACCATGGCATGACAACAAAAACCGGAG‑CCGGACTCCGGTTTTTTtgt                         <  1:534035/150‑1 (MQ=25)                                                          gATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAG‑CCGGACTCCGGTTTTTTtgtg                        >  1:1506172/1‑150 (MQ=255)                                                          gATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAG‑CCGGACTCCGGTTTTTTtgtg                        >  1:1506171/1‑150 (MQ=255)                                                          gATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAG‑CCGGACTCCGGTTTTTTtgtg                        >  1:1506169/1‑150 (MQ=255)                                                             tctcACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAG‑CCGGACTCCGGTTTTTTTGTGAAc                     <  1:2034862/150‑1 (MQ=255)                                                             tctcACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAG‑CCGGACTCCGGTTTTTTTGTGAAc                     <  1:2034861/150‑1 (MQ=255)                                                             tctcACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAG‑CCGGACTCCGGTTTTTTTGTGAAc                     <  1:2034860/150‑1 (MQ=255)                                                                   gCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAG‑CCGGACTCCGGTTTTTTTGTGAACCCGTCg               >  1:2177431/1‑150 (MQ=255)                                                                                aTCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCGCCATGGCATGACAACAAAAAACGGAG‑CCGGACTCCGGTTTTTTTGTGAACCCGTCGGCTATTTCatccc  >  1:2832040/1‑146 (MQ=255)                                                                                                        tcccgaccccTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAG‑CCGGACTCCGGTTTTTTTGTGAAc                     >  1:1450752/9‑107 (MQ=255)                                                                                                                                                     |                                                                                  AAAAATCGACACCTCCATTTAATTGCCTTTCCAGAGCCACAGCTCTTCTTTCCATTCGATTCTCACGCCCCAATAGCCTATCCAGTAGATTTGCCCCTATATTTCCAGACACCTGTTATTAAATATTCATTCCAAACACAGGGAGTCATAACAAACATCACCATGGCATGACAACAAAAACCGGAG‑CCGGACTCCGGTTTTTTTGTGAACCCGTCGGCTATTTCA‑‑‑‑  >  Xen14_25/73016‑73240

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.