New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_139	= 1349	0 (0.000)	26 (0.290)	11/274	2.0	100%	intergenic (‑120/–)	Xen14_04753/–	hypothetical protein/–
	?	Xen14_148	954 =	NA (NA)					intergenic (‑57/–)	Xen14_04761/–	hypothetical protein/–

AAAGTTGTCCTTATCGGTGAAAGCATTCGTCGTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_139/1204‑1349                                                                                                                                                   |                                                    aaaGTTGTCCTTATCGGTGAAAGCATTCGTCGTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑ccacc                                                 <  1:178346/150‑5 (MQ=255) aaaGTTGTCCTTATCGGTGAAAGCATTCGTCGTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑ccacc                                                 <  1:178341/150‑5 (MQ=255) aaaGTTGTCCTTATCGGTGAAAGCATTCGTCGTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑ccacc                                                 <  1:178343/150‑5 (MQ=255)   aGTTGTCCTTATCGGTGAAAGCATTCGTCGTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑ccaccgg                                               <  1:3728785/150‑7 (MQ=255)     ttGTCCTTATCGGTGAAAGCATTCGTCGTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑ccaccggac                                             <  1:3525054/150‑9 (MQ=255)     ttGTCCTTATCGGTGAAAGCATTCGTCGTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑ccaccggac                                             >  1:2965506/1‑142 (MQ=255)      tGTCCTTATCGGTGAAAGCATTCGTCGTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑ccaccggaca                                            <  1:2431862/150‑10 (MQ=255)              tCGGTGAAAGCATTCGTCGTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaaca                                    <  1:1661039‑M1/150‑18 (MQ=255)                ggTGAAAGCATTCGTCGTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑ccaccggacat                                           <  1:1486885/141‑11 (MQ=255)                 gTGAAAGCATTCGTCGTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaacaaaa                                 >  1:578951‑M1/1‑130 (MQ=255)                   gAAAGCATTCGTCGTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACATCCaccggacatgacaacaaaaac                                <  1:1932586‑M1/150‑22 (MQ=255)                    aaaGCATTCGTCGTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaacaaaaacc                              <  1:1582096‑M1/150‑24 (MQ=255)                    aaaGCATTCGTCGTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaacaaaaacc                              <  1:3269442‑M1/150‑24 (MQ=255)                       gCATTCGTCGTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaacaaaaaccgga                           <  1:1422220‑M1/150‑27 (MQ=255)                       gCATTCGTCGTCCTGTTTATCCATATTTTCTGCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaacaaaaaccgga                           <  1:3145038‑M1/150‑27 (MQ=255)                        cATTCGTCGTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaacaaaaaccggag                          >  1:1415903‑M1/1‑123 (MQ=255)                        cATTCGTCGTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaacaaaaaccggag                          >  1:2042926‑M1/1‑123 (MQ=255)                        cATTCGTCGTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaacaaaaaccggag                          >  1:2042927‑M1/1‑123 (MQ=255)                         aTTCGTCGTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaacaaaaaccggagc                         >  1:1565916‑M1/1‑122 (MQ=255)                         aTTCGTCATCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaacaaaaaccggagc                         >  1:1367‑M1/1‑122 (MQ=255)                          ttCGTCGTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCCAACAAACAT‑Caccatggcatgccaacaaaaaccggagcc                        <  1:1848440‑M1/150‑30 (MQ=255)                           tcgtcgTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACATCCaccggacatgacaacaaaaaacggagccg                        >  1:2968620‑M1/1‑121 (MQ=255)                            cgtcgtCCTGTTTATCCGTATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaacaaaaaccggagccgg                      <  1:1846067‑M1/150‑32 (MQ=255)                             gtcgtcCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaacaaaaaccggagccgga                     <  1:3385602‑M1/150‑33 (MQ=255)                                     gTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACATCCaccggacatgacaacaaaaaccggagccggactccggtt              <  1:3202806‑M1/150‑40 (MQ=255)                                      tttATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaacaaaaaccggagccggactccggttt            <  1:3782097‑M1/150‑42 (MQ=255)                                      tttATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaacaaaaaccggagccggactccggttt            <  1:499360‑M1/150‑42 (MQ=255)                                      tttATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaacaaaaaccggagccggactccggttt            <  1:499362‑M1/150‑42 (MQ=255)                                      tttATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaacaaaaaccggagccggactccggttt            <  1:499365‑M1/150‑42 (MQ=255)                                      tttATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaacaaaaaccggagccggactccggttt            <  1:499366‑M1/150‑42 (MQ=255)                                          tCCATATTTTCTTCACAACTAACTCTTTAATCTATGAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaacaaaaaccggagccggactccggttttgtg        <  1:399308‑M1/150‑46 (MQ=255)                                           ccATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaacaaaaaccggagccggactccggttttgtga       <  1:3393916‑M1/150‑47 (MQ=255)                                           ccATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaacaaaaaccggagccggactccggttttgtga       >  1:3754355‑M1/1‑104 (MQ=255)                                                ttttCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑Caccatggcatgccaacaaaaaccggagccggactccggttttgtgaagctg  >  1:1384710‑M1/1‑99 (MQ=255)                                                        acaACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑ccaccggaca                                            >  1:3263542/1‑91 (MQ=255)                                                                                                                                                   |                                                    AAAGTTGTCCTTATCGGTGAAAGCATTCGTCGTCCTGTTTATCCATATTTTCTTCACAACTAACTCTTTAATCTATTAATTATATTGGCATACTCAACCACAAAACCTCCAGCAGTTTTGCCATCTTTGCTTTCCTAACAAACAT‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_139/1204‑1349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.