| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Xen14_117 | = 77 | 25 (0.340) | 36 (0.510) | 25/292 | 2.0 | 39.2% | intergenic (–/+1345) | –/nleF | –/Effector protein NleF |
| ? | Xen14_7 | 136257 = | 87 (1.240) | coding (569/651 nt) | zinT | Metal‑binding protein ZinT | |||||
‑‑‑‑‑‑TTTAACAGAACAGTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAGGAGCAAGTCATCTATCATGGTAAAGCTAACCAGAAATATAGG > Xen14_117/1‑225 | cagttatttAACAGAACAGTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATaca < 1:1306754/144‑1 (MQ=255)cagttatttAACAGAACAGTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTACGTCTGTAGAAAAAAAACGAGAAAAAGGCGAACGATAAATaca > 1:3512217/7‑150 (MQ=255) acagaacagTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtct > 1:1952906‑M1/1‑73 (MQ=255) cagaacagTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctc > 1:32411‑M1/1‑72 (MQ=255) cagaacagTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCta < 1:1986870/150‑1 (MQ=255) agaacagTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctca > 1:2980058‑M1/1‑71 (MQ=255) acagTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattg < 1:3196154‑M1/150‑83 (MQ=255) acagTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACa < 1:3080169/150‑1 (MQ=255) acagTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACa < 1:3080170/150‑1 (MQ=255) cagTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAg < 1:777321/150‑1 (MQ=255) gTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTCTTATGTCTGTAGAAAAAAAACGAGAAAAAGGCGAACGATAAATACACaa > 1:2206711/1‑135 (MQ=255) ccTGGTAGTAACAACTCTAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctaattgattttt > 1:371668‑M1/1‑62 (MQ=255) tGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgattttttt < 1:1081889‑M1/150‑91 (MQ=255) gtaACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgtgct > 1:2912679‑M1/1‑55 (MQ=255) gtaACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTCTGTCTGTAGAAAAAAAACGAGAAAAAGGCGAACGATAAATACACAACCCAGCTATACAGACTGGCAGCGCa > 1:3728404/1‑150 (MQ=255) aacaacTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgattcttttgcgctga > 1:3713382‑M1/1‑53 (MQ=255) cTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagntgatgtctcattgatttttttgcgctgacttca > 1:1773512‑M1/1‑48 (MQ=255) cTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgcctcattgatttttttgcgctgacttca > 1:3218528‑M1/1‑48 (MQ=255) cTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTCTTCTGTCTTTAGAAAAAAAACGAGAAAAAAGCGAACGACAAACACACCACTCAACTCTACCGAATGGCAACGCAAACGtct > 1:1930379/1‑150 (MQ=21) cTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTCTTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGtct > 1:1723893/1‑150 (MQ=255) aaTTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTCTATTACGTCCGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAACAAACAACTCAACTATACAAACTAGTAACGCAAATGTCTCCAg > 1:3471407/1‑150 (MQ=25) aTTTACCATGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgctttttttgcgctgacttcagttat > 1:2706212‑M1/1‑43 (MQ=255) aTTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttat > 1:2011849‑M1/1‑43 (MQ=255) aTTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcag < 1:3799099‑M1/146‑104 (MQ=255) aTTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTCTGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGAGAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAgg > 1:1485409/1‑150 (MQ=255) aTTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCCGCTATACAGACTGGCAGCCCAAATGTCTCCAgg > 1:269920/1‑150 (MQ=255) tttACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAg < 1:785266/117‑1 (MQ=255) tatacgcgctcaaataagtaaGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatt < 1:2120909‑M1/140‑109 (MQ=255) tatacgcgctcaaataagtaaGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatt < 1:2120907‑M1/140‑109 (MQ=255) tatacgcgctcaaataagtaaGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagtggagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatt < 1:2120906‑M1/140‑109 (MQ=255) tgccaaGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttattta < 1:393238‑M1/148‑111 (MQ=255) tACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttattta < 1:393239‑M1/150‑111 (MQ=255) tACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGGAAAAGGCGAAAGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAGGAGc > 1:3512992/1‑150 (MQ=255) tACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAAGAGc > 1:3512993/1‑150 (MQ=255) ccAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaac < 1:3400167‑M1/150‑113 (MQ=255) cAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaaca < 1:774141‑M1/150‑114 (MQ=255) cAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAGGAGCAAg < 1:2022297/150‑1 (MQ=255) cAAATAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattgtccataccagttgagtagcgaagaagtggtagaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacagaaca > 1:1421198‑M1/1‑32 (MQ=255) cAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATTTCTGTAGAAAAAAAACGAGAAAAAGGAGAACGATAAATACACAACTCAGCTATGCCGACTGGCAGCGCAAATGTCTCCAGGAGCAAGTcctc > 1:3530106/1‑147 (MQ=255) aaTAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAGGAGCAAGTCATCTa < 1:3762156/150‑1 (MQ=255) aaTAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAGGAGCAAGTCATCTa < 1:2326129/150‑1 (MQ=255) aTAAGTAAGAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgcattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacagaacagtg < 1:198735‑M1/150‑122 (MQ=255) taagcaagAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacagaacagtgc < 1:1024173‑M1/150‑123 (MQ=255) taagcaagAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacagaacagtgc < 1:1024175‑M1/150‑123 (MQ=255) gtaagAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacagaacagtgcctg > 1:2600862‑M1/1‑25 (MQ=255) ggcagagaagctcagaaacgcTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatt < 1:3761171‑M1/123‑109 (MQ=255) agAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttt > 1:3791543‑M1/1‑22 (MQ=255) agAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAAACGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAGGAGCAAGTCATc > 1:3623220/1‑140 (MQ=255) gAAAGACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacagaacagtgcctgg < 1:2714500‑M1/147‑127 (MQ=255) gAAAAACTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacagaacagtgcctgg < 1:2714498‑M1/147‑127 (MQ=255) aaaaCTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacagaacagtgcctggtagta > 1:734369‑M1/1‑19 (MQ=255) aaCTCAGACACGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacagaacagtgcctggtagtaac < 1:851287‑M1/150‑134 (MQ=255) tCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAGGAGCAAGTCATCTATCATGGTAAAGCTAAc < 1:3773462/150‑1 (MQ=255) cAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAGGAGCAAGTCATCTATCATGGTAAAGCTAAcc < 1:2559364/150‑1 (MQ=255) acacGCTCATtgaatgaaatggaaaacttgccaacgtattatccctatcagttgattagcgaagaagtggtcgaggagatgatttctcattgatttttttgcgctgacttcagttatttaacagaacagtgcctggtagtaacaactata < 1:1014388‑M1/150‑141 (MQ=255) cGCTCATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacagaacagtgcctggtagtaacaactataa > 1:938492‑M1/1‑7 (MQ=255) cGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAGGAGCAAGTCATCTATCATGGTAAAGCTAACCAGAAat < 1:1313135/150‑1 (MQ=255) cATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacagaacagtgcctggtagtaacaactataatttacc > 1:387649‑M1/1‑3 (MQ=255) cATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacagaacagtgcctggtagtaacaactataatttacc > 1:15125‑M1/1‑3 (MQ=255) cATtgaatgaaatggaaaactggccaacgtattatccctatcagttgagtagcgaagaagtggtcgaggagatgatgtctcattgatttttttgcgctgacttcagttatttaacagaacagtgcctggtagtaacaactataattt > 1:3408743‑M1/1‑3 (MQ=255) aTACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCATGAGCAAGTCATCTATCATGGTAAAGCTAACCAGAAATATAgg < 1:3378105/150‑1 (MQ=255) | ‑‑‑‑‑‑TTTAACAGAACAGTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATACTTGAGTCGTGTCTTTTTTATTATGTCTGTAGAAAAAAACCGAGAAAAAGGCGAACGATAAATACACAACTCAGCTATACAGACTGGCAGCGCAAATGTCTCCAGGAGCAAGTCATCTATCATGGTAAAGCTAACCAGAAATATAGG > Xen14_117/1‑225 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |