| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Xen14_117 | = 77 | 25 (0.340) | 36 (0.510) | 25/292 | 2.0 | 39.2% | intergenic (–/+1345) | –/nleF | –/Effector protein NleF |
| ? | Xen14_7 | 136257 = | 87 (1.240) | coding (569/651 nt) | zinT | Metal‑binding protein ZinT | |||||
ACAGAACAGTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Xen14_117/5‑77‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAGTAACAACTATAATTTACC > Xen14_7/136257‑136403 ACAGAACAGTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCT > 1:1952906/1‑150 CAGAACAGTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTC > 1:32411/1‑150 AGAACAGTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCA > 1:2980058/1‑150 ACAGTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTG < 1:3196154/150‑1 CCTGGTAGTAACAACTCTAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTAATTGATTTTT > 1:371668/1‑150 TGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTT < 1:1081889/150‑1 GTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGTGCT > 1:2912679/1‑150 AACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTCTTTTGCGCTGA > 1:3713382/1‑150 CTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGNTGATGTCTCATTGATTTTTTTGCGCTGACTTCA > 1:1773512/1‑150 CTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGCCTCATTGATTTTTTTGCGCTGACTTCA > 1:3218528/1‑150 ATTTACCATGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGCTTTTTTTGCGCTGACTTCAGTTAT > 1:2706212/1‑150 ATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTAT > 1:2011849/1‑150 ATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAG < 1:3799099/146‑1 tatacgcgctCAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATT < 1:2120907/140‑1 tatacgcgctCAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATT < 1:2120909/140‑1 tatacgcgctCAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTGGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATT < 1:2120906/140‑1 tgCCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTA < 1:393238/148‑1 TACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTA < 1:393239/150‑1 CCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAAC < 1:3400167/150‑1 CAAGACAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACA < 1:774141/150‑1 CAAATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTGTCCATACCAGTTGAGTAGCGAAGAAGTGGTAGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACA > 1:1421198/1‑150 ATAAGTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGCATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTG < 1:198735/150‑1 TAAGCAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGC < 1:1024173/150‑1 TAAGCAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGC < 1:1024175/150‑1 ggcagagaagCTCAGAAACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATT < 1:3761171/123‑1 GTAAGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTG > 1:2600862/1‑150 AGAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTT > 1:3791543/1‑111 GAAAGACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGG < 1:2714500/147‑1 GAAAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGG < 1:2714498/147‑1 AAAACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAGTA > 1:734369/1‑150 AACTCAGACACGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAGTAAC < 1:851287/150‑1 ACACGCTCATTGAATGAAATGGAAAACTTGCCAACGTATTATCCCTATCAGTTGATTAGCGAAGAAGTGGTCGAGGAGATGATTTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAGTAACAACTATA < 1:1014388/150‑1 CGCTCATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAGTAACAACTATAA > 1:938492/1‑148 CATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAGTAACAACTATAATTTACC > 1:387649/1‑150 CATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAGTAACAACTATAATTTACC > 1:15125/1‑150 CATTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAGTAACAACTATAATTT > 1:3408743/1‑147 ACAGAACAGTGCCTGGTAGTAACAACTATAATTTACCAAGACAAATAAGTAAGAAAAACTCAGACACGCTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Xen14_117/5‑77‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atTGAATGAAATGGAAAACTGGCCAACGTATTATCCCTATCAGTTGAGTAGCGAAGAAGTGGTCGAGGAGATGATGTCTCATTGATTTTTTTGCGCTGACTTCAGTTATTTAACAGAACAGTGCCTGGTAGTAACAACTATAATTTACC > Xen14_7/136257‑136403 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |