| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Xen14_102 | = 5552 | 0 (0.000) | 43 (0.050) +AGGAGAGC |
18/280 | 1.6 | 100% | intergenic (‑46/–) | pinR/– | Serine recombinase PinR/– |
| ? | Xen14_141 | 1 = | 0 (0.000) | intergenic (–/‑23) | –/Xen14_04755 | –/hypothetical protein | |||||
CGGTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Xen14_102/5419‑5552 | cGGTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtc > 1:2214545‑M1/1‑134 (MQ=255)cGGTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACATATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGGTCCAGGGGGTAATCTACTCTCCTGATTCaggagagcttatggtc > 1:3553454‑M1/1‑134 (MQ=255) gTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcac > 1:924697‑M1/1‑132 (MQ=255) gTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcac > 1:670469‑M1/1‑132 (MQ=255) cccTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgaga > 1:1695828‑M1/1‑124 (MQ=255) cccTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGATGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgaga > 1:3830730‑M1/1‑124 (MQ=255) ggTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatg > 1:532790‑M1/1‑116 (MQ=255) gTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatgg > 1:323347‑M1/1‑115 (MQ=255) cTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaa < 1:2310746‑M1/150‑44 (MQ=255) aCCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaat > 1:417524‑M1/1‑105 (MQ=255) aCCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaat > 1:417523‑M1/1‑105 (MQ=255) tAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAGTCAGATCCAGGGGGTAATCTGCTCTCATGATTCaggagagcttatggtcacttttgagaccgttatggcaattaaaatcctgcaca > 1:3022497‑M1/1‑97 (MQ=255) tAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcaca > 1:968935‑M1/1‑97 (MQ=255) aCGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttacggaaattaaaatcctgcacaag > 1:2231383‑M1/1‑95 (MQ=255) gTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaa > 1:3726964‑M1/1‑88 (MQ=255) gTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaa > 1:89940‑M1/1‑88 (MQ=255) ttacgcacacctgtcacgaacGGTGCAATAGTGATCCACACCCAACGCATGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaat > 1:3311089‑M1/11‑87 (MQ=255) tcatcttcccctgtcacgaacGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaat < 1:3593286‑M1/140‑64 (MQ=255) tCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcgtgcacaagcagggaat < 1:460933‑M1/150‑64 (MQ=255) cgtccagatactgtcacGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaat < 1:1247251‑M1/142‑64 (MQ=255) cgtccagatactgtcacGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaat < 1:1247253‑M1/142‑64 (MQ=255) cgtccagatactgtcacGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaat < 1:3233736‑M1/142‑64 (MQ=255) cgtccagatactgtcacGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaat < 1:1247254‑M1/142‑64 (MQ=255) cgtccagatactgtcacGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCAAGGGGGTAATCTGCTCTCCTGATTCaagagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaat > 1:571221‑M1/9‑87 (MQ=255) gtccagatactgtcaCGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatg < 1:2335163‑M1/143‑65 (MQ=255) tcttcccctgtcacgAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgag < 1:2972625‑M1/143‑67 (MQ=255) tcttcccctgtcacgAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgag < 1:1190334‑M1/143‑67 (MQ=255) cacCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgag < 1:2684594‑M1/150‑67 (MQ=255) ttcccctgtcaCGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagta > 1:1262743‑M1/6‑82 (MQ=255) cacacctgtcaCGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagta < 1:799548‑M1/145‑69 (MQ=255) gatacTGGCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggatagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtag < 1:2583971‑M1/148‑70 (MQ=255) cccctgtCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtagc < 1:961913‑M1/147‑71 (MQ=255) cccctgtCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtagc < 1:790770‑M1/147‑71 (MQ=255) cccctgtCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtagc < 1:965401‑M1/147‑71 (MQ=255) cccctgtCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtagc < 1:965406‑M1/147‑71 (MQ=255) cccctgtCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCCGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtagc < 1:961915‑M1/147‑71 (MQ=255) cacctgtCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtagc > 1:2138248‑M1/4‑80 (MQ=255) ccctgTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtagcc > 1:332349‑M1/3‑79 (MQ=255) cctGTCACGAACGGTGCAGTATTGATCCACACCCAACGCCTGAAATCAAATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttgtgagacagttatggaaattaaaatcctgcacaagcagggaaggagtagcag < 1:3367519‑M1/149‑73 (MQ=255) cctGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtagccg > 1:1414449‑M1/2‑78 (MQ=255) cTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtagccgg < 1:2577969‑M1/150‑74 (MQ=255) cTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtagccgg > 1:359563‑M1/1‑77 (MQ=255) cTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTCaggagagcttatggtcacttttgagacagttatggaaattaaaatcctgcacaagcagggaatgagtagccgg > 1:359561‑M1/1‑77 (MQ=255) | CGGTATTACGCCCTAAACGGTCAATAGCTACCACAACTAACGTATCGTCACACCTTACTGTCACGAACGGTGCAATAGTGATCCACACCCAACGCCTGAAATCAGATCCAGGGGGTAATCTGCTCTCCTGATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Xen14_102/5419‑5552 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |