| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_004302 | 23,480 | A→C | E213A (GAA→GCA) | r1tp40 → | ORF40 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_004302 | 23,480 | 0 | A | C | 100.0% | 11.9 / NA | 6 | E213A (GAA→GCA) | r1tp40 | ORF40 |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (5/1); total (5/1) | |||||||||||
ACGGTGGAACTCTAAACGAATTAAGACGTAGACAATACCGTGCTAAGTATGAATTGATATCTGAATAGATGTTGACTTTAATGTATTTGTATGATAAAATGAATATATAGATACGTGGTAAGGAAAACTGAT > NC_004302/23417‑23548 | agggTGGAACTCTAAACGAATTAAGACGTAGACAATACCGTGCTAAGTATGAATTGATATCTGCATAGATGTTGa > 1:3088079/3‑75 (MQ=255) agagaGACAATACCGTGCTAAGTATGAATTGATATCTGCATAGATGTTGACTTTAATGTATTTGTATGATAAAAt > 1:13211877/5‑75 (MQ=255) tattGCTAAGTATGAATTGATATCTGCATAGATGTTGACTTTAATGTATTTGTATGATAAAATGAATATATAGAt > 1:15601570/4‑75 (MQ=255) atgtgagaaGTATGAATTGATATCTGCATAGATGTTGACTTTAATGTATTTGTATGATAAAATGAATATATAGAt > 1:6166616/8‑75 (MQ=255) acctaggaGTATGAATTGATATCTGCATAGATGTTGACTTTAATGTATTTGTATGATAAAATGAATATATAGATa > 1:1885681/8‑75 (MQ=255) tatCTGCATAGATGTTGACTTTAATGTATTTGTATGATAAAATGAATATATAGATACGTGGTAAGGtaaaaaata < 1:11629821/75‑6 (MQ=255) | ACGGTGGAACTCTAAACGAATTAAGACGTAGACAATACCGTGCTAAGTATGAATTGATATCTGAATAGATGTTGACTTTAATGTATTTGTATGATAAAATGAATATATAGATACGTGGTAAGGAAAACTGAT > NC_004302/23417‑23548 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |