Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_004302	1	52	52	NA [0]	[1] 2	–/r1tp01	–/Integrase

GATAATGGCTTTATTCTTGATTTTTAATGATTTGTTGTATTTTTGTTGTAAGAAAATTATAAC‑TCCATTAGTAGCTCAATTATTTTATCC  >  NC_004302/38‑127                |                                                                            gATAATGGCTTTATTCTTGATTTTTAATGATTTGTTGTATTTTTGTTGTAAGAAAATTATAACATCCAttcataa                  <  1:2241235/75‑6 (MQ=255)                cTTGATTTTTAATGATTTGTTGTATTTTTGTTGTAAGAAAATTATAAC‑TCCATTAGTAGCTCAATTAtttttatc  <  1:11948335/75‑5 (MQ=255)                |                                                                            GATAATGGCTTTATTCTTGATTTTTAATGATTTGTTGTATTTTTGTTGTAAGAAAATTATAAC‑TCCATTAGTAGCTCAATTATTTTATCC  >  NC_004302/38‑127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑