| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_004302 | 3,556 | +GT | coding (316/798 nt) | r1tp05 → | ORF5 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_004302 | 3,554 | 1 | . | G | 91.5% | 1136.3 / 68.2 | 488 | coding (314/798 nt) | r1tp05 | ORF5 |
| Reads supporting (aligned to +/- strand): ref base . (40/1); new base G (436/6); total (481/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.65e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.06e-01 | |||||||||||
| * | NC_004302 | 3,554 | 2 | . | T | 91.4% | 1128.6 / 71.6 | 488 | coding (314/798 nt) | r1tp05 | ORF5 |
| Reads supporting (aligned to +/- strand): ref base . (41/1); new base T (440/6); total (481/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.70e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.82e-01 | |||||||||||
Only 100 of 503 total aligned reads displayed.
AAATTGCCAAGTGCTGAGCCATTTCAGGATTG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCG‑AA‑GCACGGA‑‑GT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAACCTTGCTACACA > NC_004302/3484‑3623 || gaaccAAGTGCTGAGCCATTTCAGGATTG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGA‑‑Gtgtac > 1:6719936/4‑71 (MQ=255) cAAGTGCTGAGCCATTTCAGGATTG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGA‑‑GT‑‑atccacag < 1:11050235/75‑8 (MQ=255) tggAGCCATTTCAGGATTG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATg > 1:634011/3‑75 (MQ=255) tGAGCCATGTCAGGATTG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGc > 1:3113537/1‑75 (MQ=255) gatccATTTCAGGATTG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCg > 1:5405796/4‑75 (MQ=255) gaattaTTTCAGGATTG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCg > 1:15612189/6‑75 (MQ=255) atcaaTTTCAGGATTG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGa > 1:3634624/5‑75 (MQ=255) tgcatataGGATTG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAg > 1:9038732/8‑75 (MQ=255) gcggggaaGGATGG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAg > 1:11618075/8‑75 (MQ=255) ctttgcaaGGATTG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAg > 1:16446590/8‑75 (MQ=255) tgaaaaaGGATTG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGA‑‑GTGGA‑CATGACGGATGCGAAGc > 1:2781840/7‑75 (MQ=255) gaccataGGATTG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGc > 1:15783418/7‑75 (MQ=255) gctgggggATTG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCt > 1:9443061/7‑75 (MQ=255) gcgtCAGGATTG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAATGT‑‑A‑CATGACGGATGCGAAGCt > 1:15472375/4‑75 (MQ=255) ggtgaGGATTG‑‑GATATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCtt > 1:15227552/5‑75 (MQ=255) gagtaagATTG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCtt > 1:13672364/7‑75 (MQ=255) tatttggttG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTg > 1:2017183/8‑75 (MQ=255) ggtattgttG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTg > 1:2528802/8‑75 (MQ=255) gagaGGATTG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTg > 1:7070838/4‑75 (MQ=255) agtaGGATTG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTg > 1:14108312/4‑75 (MQ=255) acagagATTG‑‑AGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTg > 1:9342110/6‑75 (MQ=255) aatgggtttG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTg > 1:8077592/8‑75 (MQ=255) tgaggtatG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTga > 1:11803397/8‑75 (MQ=255) gacttaTTG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTga > 1:1429487/6‑75 (MQ=255) ttattctG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaa > 1:11539866/7‑75 (MQ=255) tgcggctG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaa > 1:3246518/7‑75 (MQ=255) ggagtgtG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaa > 1:10201869/7‑75 (MQ=255) gccggggg‑‑ggTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaa > 1:7840069/8‑75 (MQ=255) cAGGATTGGCGGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTg > 1:15988722/1‑75 (MQ=255) cAGGATTG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaa > 1:12316541/1‑75 (MQ=255) agggcttG‑‑GATATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaa > 1:733502/6‑75 (MQ=255) aatgATTG‑‑GTTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaa > 1:12050893/4‑75 (MQ=255) cacgatG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaag > 1:16896341/6‑75 (MQ=255) atttgcg‑‑ggTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaag > 1:2986397/7‑75 (MQ=255) atgATTG‑‑GGGATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaag > 1:7979297/3‑75 (MQ=255) ttggag‑‑ggTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaaga > 1:6017100/6‑75 (MQ=255) attttG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaaga > 1:4549487/4‑75 (MQ=255) gactG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaagaa > 1:12768506/4‑75 (MQ=255) ttcttaggTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaaga > 1:2679510/7‑75 (MQ=255) gaatgcagTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaaga > 1:11229605/8‑75 (MQ=255) aacggtagTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaaga > 1:1705303/8‑75 (MQ=255) ggcctagTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaagaa > 1:9689853/7‑75 (MQ=255) ggatgactataTGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaagaa > 1:11913543/8‑75 (MQ=255) ggaggtttataTGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaagaa > 1:5149617/8‑75 (MQ=255) ccctgactataTGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaagaa > 1:8379318/8‑75 (MQ=255) caacgaatataTGAAGAAGTGCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaagaa > 1:8702171/8‑75 (MQ=255) aggatggTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTgaagaa > 1:163058/6‑75 (MQ=255) ggttgTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGt > 1:4089825/5‑75 (MQ=255) cgccaaatatGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGt > 1:15671692/7‑75 (MQ=255) aggggggtatGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGt > 1:10035044/8‑75 (MQ=255) aaatatttatGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGt > 1:8258637/8‑75 (MQ=255) aggacatatCAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTa > 1:13008411/6‑75 (MQ=255) gtaataatGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTAc > 1:863555/7‑75 (MQ=255) ggagaattGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTAc > 1:2191986/8‑75 (MQ=255) gagTATATGTAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTAc > 1:2933260/3‑75 (MQ=255) atctgtatGACGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTAc > 1:68951/6‑75 (MQ=255) atatggatGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTAc > 1:4883762/7‑75 (MQ=255) tgTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACt > 1:1617404/2‑75 (MQ=255) tggggggaagaaGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTg > 1:879009/7‑75 (MQ=255) gTATATGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTg > 1:14015326/1‑75 (MQ=255) ctgtatGAAGAAGTCCTCCC‑AACAATCCG‑AATGCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTg > 1:14642744/4‑75 (MQ=255) ctcgattaagaagTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTg > 1:985658/8‑75 (MQ=255) atataTGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTg > 1:891889/2‑75 (MQ=255) tgttggaagaaGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGc > 1:13434048/6‑75 (MQ=255) tataTGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGc > 1:609044/1‑75 (MQ=255) taaatGAAGTAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGc > 1:13307931/4‑75 (MQ=255) gagatGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGc > 1:71410/4‑75 (MQ=255) aagttagagaagTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGc > 1:6258897/8‑75 (MQ=255) gtaaacaaagTCCTCCC‑AACAATCCGAAA‑GCACGGAATGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCtt > 1:13939324/8‑75 (MQ=255) cgtGAAGTAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCtt > 1:13215160/3‑75 (MQ=255) cgtGAAGTAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCtt > 1:14411317/3‑75 (MQ=255) agtagtgaagTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCtt > 1:10119323/7‑75 (MQ=255) taagagaagTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACT‑CTTaa > 1:14217910/5‑75 (MQ=255) attaaaaagTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTa > 1:4764461/7‑75 (MQ=255) atGAAGAAGTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTa > 1:1381501/1‑75 (MQ=255) tgcaagTCCTCCC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATc > 1:10624902/4‑75 (MQ=255) ggggtaacctccCAAACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAAt > 1:14858889/8‑75 (MQ=255) taggatctccC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCa > 1:5664636/7‑75 (MQ=255) atttctccC‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGa > 1:16732058/5‑75 (MQ=255) gggcgcc‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATa > 1:7737279/6‑75 (MQ=255) tatgcataacaaTCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATa > 1:15020658/8‑75 (MQ=255) tatgcataacaaTCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATa > 1:10290875/8‑75 (MQ=255) tttgagcacaaTCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATac > 1:189139/8‑75 (MQ=255) ttgacaaacaaTCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATac > 1:14568761/7‑75 (MQ=255) gtc‑aacaaTCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACt > 1:654432/3‑75 (MQ=255) ccc‑AACAATCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACt > 1:12601323/1‑75 (MQ=255) acgggataaTCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATacac > 1:10928660/8‑75 (MQ=255) acgggataaTCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATacac > 1:7458590/8‑75 (MQ=255) tgggattaTCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTCAATCCAGATACACt > 1:13527128/8‑75 (MQ=255) agtcaaTCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCa > 1:4357777/4‑75 (MQ=255) ataTCCGAAA‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTa > 1:5905519/3‑75 (MQ=255) taggatga‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAAc > 1:3834845/8‑75 (MQ=255) ggatagta‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAAc > 1:1287897/8‑75 (MQ=255) gaaggaaa‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACAATCATTAAc > 1:3536604/7‑75 (MQ=255) acgcgaga‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAAc > 1:14747097/8‑75 (MQ=255) aggaga‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAACCt > 1:5304560/6‑75 (MQ=255) a‑GCACGGAGTGT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAACCTTGCTa > 1:12445589/1‑75 (MQ=255) agtacaaa‑‑GT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAACCTTGCTaca > 1:7206825/8‑75 (MQ=255) aaagcGGA‑‑GT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAACCTTGCTaca > 1:10725210/5‑75 (MQ=255) ttggA‑‑GT‑‑AGCATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAACCTTGCTacgca > 1:9157031/3‑72 (MQ=255) || AAATTGCCAAGTGCTGAGCCATTTCAGGATTG‑‑GGTATATGAAGAAGTCCTCCC‑AACAATCCG‑AA‑GCACGGA‑‑GT‑‑A‑CATGACGGATGCGAAGCTTGAAGAAGTACTGCTTAATCCAGATACACTCATTAACCTTGCTACACA > NC_004302/3484‑3623 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |