mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.0 revision fe39cd8f5880
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 317 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NODE_92 | 316 | 0 | T | G | 75.1% | 1475.4 / inf | 710 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 309 | 0 | C | T | 74.1% | 1042.1 / inf | 665 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 312 | 0 | G | C | 74.1% | 1205.0 / inf | 665 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 311 | 0 | G | A | 73.8% | 1016.9 / inf | 665 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 124 | 0 | A | G | 71.6% | 623.3 / inf | 641 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 240 | 0 | A | G | 71.4% | 1023.1 / inf | 627 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 78 | 0 | C | T | 71.3% | 219.4 / inf | 408 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 156 | 0 | C | G | 71.1% | 635.8 / inf | 657 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 186 | 0 | T | C | 71.1% | 764.0 / inf | 620 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 246 | 0 | A | G | 71.1% | 1059.7 / inf | 638 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 196 | 0 | A | G | 70.7% | 806.8 / inf | 629 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 198 | 0 | T | A | 70.6% | 750.5 / inf | 630 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 200 | 0 | A | C | 70.1% | 830.0 / inf | 633 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 136 | 0 | G | A | 69.5% | 426.4 / inf | 655 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 132 | 0 | C | T | 69.4% | 418.7 / inf | 657 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 135 | 0 | T | C | 69.4% | 541.4 / inf | 658 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 138 | 0 | T | G | 69.3% | 471.1 / inf | 656 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 163 | 0 | A | G | 69.0% | 561.5 / inf | 627 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 159 | 0 | C | G | 68.3% | 505.6 / inf | 632 | intergenic (–/–) | –/– | –/– |
| * | NODE_92 | 160 | 0 | G | A | 68.3% | 399.5 / inf | 630 | intergenic (–/–) | –/– | –/– |
| Marginal new junction evidence (lowest skew 10 of 217 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NODE_53 | = 107 | 386 (0.890) | 44 (0.680) +127 bp |
19/44 | 3.1 | 41.1% | intergenic (–/+166) | –/EcoliAnna_04105 | –/NAD(P)H‑flavin reductase |
| ? | NODE_53 | 142 = | 467 (1.070) | intergenic (–/+131) | –/EcoliAnna_04105 | –/NAD(P)H‑flavin reductase | |||||
| * | ? | NODE_5 | = 162437 | 275 (0.870) | 22 (0.610) +132 bp |
10/34 | 3.1 | 40.1% | intergenic (+97/+84) | EcoliAnna_01167/cca | undecaprenyl‑diphosphate phosphatase/fused tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase Cca |
| ? | NODE_5 | 162477 = | 301 (0.960) | intergenic (+137/+44) | EcoliAnna_01167/cca | undecaprenyl‑diphosphate phosphatase/fused tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase Cca | |||||
| * | ? | NODE_4 | 77345 = | 142 (0.740) | 86 (0.510) | 73/266 | 3.4 | 45.5% | coding (38/537 nt) | EcoliAnna_00891 | integrase |
| ? | NODE_4 | 79174 = | 79 (0.460) | coding (289/630 nt) | EcoliAnna_00894 | integrase | |||||
| * | ? | NODE_17 | = 67973 | 344 (1.060) | 60 (0.750) +112 bp |
27/74 | 3.4 | 41.5% | intergenic (‑80/+78) | nrdG/nrdD | anaerobic ribonucleoside‑triphosphate reductase‑activating protein/anaerobic ribonucleoside‑triphosphate reductase |
| ? | NODE_17 | 67993 = | 338 (1.040) | intergenic (‑100/+58) | nrdG/nrdD | anaerobic ribonucleoside‑triphosphate reductase‑activating protein/anaerobic ribonucleoside‑triphosphate reductase | |||||
| * | ? | NODE_17 | = 67973 | 344 (1.060) | 49 (0.610) +112 bp |
27/74 | 3.4 | 36.7% | intergenic (‑80/+78) | nrdG/nrdD | anaerobic ribonucleoside‑triphosphate reductase‑activating protein/anaerobic ribonucleoside‑triphosphate reductase |
| ? | NODE_17 | 67993 = | 338 (1.040) | intergenic (‑100/+58) | nrdG/nrdD | anaerobic ribonucleoside‑triphosphate reductase‑activating protein/anaerobic ribonucleoside‑triphosphate reductase | |||||
| * | ? | NODE_18 | = 190 | 251 (0.930) | 154 (0.600) | 80/218 | 3.6 | 62.6% | intergenic (–/+115) | –/clpB | –/ATP‑dependent chaperone ClpB |
| ? | NODE_61 | 41 = | 0 (0.000) | intergenic (–/+48) | –/hemG | –/menaquinone‑dependent protoporphyrinogen IX dehydrogenase | |||||
| * | ? | NODE_66 | 1 = | 0 (0.000) | 154 (0.100) | 91/252 | 4.1 | 100% | intergenic (–/‑86) | –/EcoliAnna_04258 | –/hypothetical protein |
| ? | NODE_83 | 24 = | 0 (0.000) | coding (10/981 nt) | EcoliAnna_04298 | IS5‑like element IS5 family transposase | |||||
| * | ? | NODE_4 | = 77360 | 132 (0.690) | 78 (0.460) | 67/266 | 4.2 | 45.6% | coding (53/537 nt) | EcoliAnna_00891 | integrase |
| ? | NODE_4 | = 79157 | 68 (0.400) | coding (306/630 nt) | EcoliAnna_00894 | integrase | |||||
| * | ? | NODE_3 | = 204757 | 1725 (7.060) | 129 (0.500) +22 bp |
77/254 | 4.6 | 12.7% | intergenic (‑454/–) | kgtP/– | alpha‑ketoglutarate permease/– |
| ? | NODE_65 | 324 = | 357 (0.990) | intergenic (–/+3) | –/EcoliAnna_04251 | –/tRNA‑Thr | |||||
| * | ? | NODE_64 | = 4672 | 0 (0.000) | 151 (0.100) | 87/262 | 5.1 | 100% | intergenic (+44/–) | ompC_3/– | porin OmpC/– |
| ? | NODE_83 | 19 = | 0 (0.000) | coding (5/981 nt) | EcoliAnna_04298 | IS5‑like element IS5 family transposase | |||||