| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NODE_4 | 17,642 | C→A | intergenic (+1428/+302) | chaA → / ← kdsA | sodium‑potassium/proton antiporter ChaA/3‑deoxy‑8‑phosphooctulonate synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NODE_4 | 17,642 | 0 | C | A | 95.8% | 33.6 / ‑2.9 | 24 | intergenic (+1428/+302) | chaA/kdsA | sodium‑potassium/proton antiporter ChaA/3‑deoxy‑8‑phosphooctulonate synthase |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base A (14/9); total (14/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.93e-01 | |||||||||||
CCACACCAAGCCGGCGTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCAAAAT > NODE_4/17498‑17662 | ccACACCAAGCCGGCGTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCaa < 1:3457915/150‑1 (MQ=11) cacaCCAAGCCGGCGTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAg < 2:2728369/150‑1 (MQ=11) cacCAAGCCGGCGTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGaa > 2:1358555/1‑150 (MQ=11) cacCAAGCCGGCGTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGaa > 1:559896/1‑150 (MQ=255) acCAAGCCGGCGTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAAt < 1:1286041/150‑1 (MQ=11) ccAAGCCGGCGTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATa < 2:1849679/150‑1 (MQ=11) cAAGCCGGCGTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAg > 1:1446893/1‑150 (MQ=11) aacccGGCGTTATCCGGTGAGGCGCTATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGc < 2:264901/147‑1 (MQ=11) aaGCCGGCGTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGc > 2:103813/1‑150 (MQ=11) aaGCCGGCGTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGc > 2:2062752/1‑150 (MQ=11) aGCCGGCGTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGcc > 1:3921703/1‑150 (MQ=11) aGCCGGCGTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGcc < 1:2585235/150‑1 (MQ=11) gCCGGCGTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCg < 2:137627/150‑1 (MQ=11) ccGGCGTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCGc < 2:395294/150‑1 (MQ=11) cGGCGTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTTAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCGCa > 1:889873/1‑150 (MQ=11) cGGCGTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGGTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑TACCAGAACAATTCAAGAATAACCGCa > 1:1136621/1‑150 (MQ=11) ggCGTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑CACCAGAACAATTCAAGAATAGCCGCaa > 1:617605/1‑150 (MQ=11) gCGTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCGCaaa > 2:2476387/1‑150 (MQ=11) cGTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGGGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCGCaaaa > 1:2842371/1‑150 (MQ=11) gTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCGCAAAAt > 1:73119/1‑150 (MQ=11) gTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCGCAAAAt > 2:317786/1‑150 (MQ=11) gTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCGCAAAAt < 2:682607/150‑1 (MQ=11) gTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCAAAAt < 2:1042174/150‑1 (MQ=11) gTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCCCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑TACCAGAACAATTCAAGAATAGCCGCAAAAt > 1:2447925/1‑150 (MQ=11) | CCACACCAAGCCGGCGTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCAAAAT > NODE_4/17498‑17662 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |