| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,103,608 | 3 bp→TTA | coding (62‑64/405 nt) | SAUSA300_RS10615 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,103,608 | 0 | G | T | 100.0% | 17.7 / NA | 8 | Q22K (CAA→AAA) | SAUSA300_RS10615 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (3/5); total (3/5) | |||||||||||
| * | NC_007793 | 2,103,609 | 0 | A | T | 100.0% | 16.9 / NA | 8 | T21T (ACT→ACA) | SAUSA300_RS10615 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (3/5); total (3/5) | |||||||||||
| * | NC_007793 | 2,103,610 | 0 | G | A | 100.0% | 17.9 / NA | 8 | T21I (ACT→ATT) | SAUSA300_RS10615 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (3/5); total (3/5) | |||||||||||
TACTTCTTCAACAATTACTTTAGCACCAGCAATTAGCGCCCTATCTTGAACTTTTAACATCGCTTGAGTTCCGAAACGATTTTCTAATTCTCTTTCTAATGCTTTATCACCTATCACTTTCACACTCATGAACTATATCCTCCACG > NC_007793/2103543‑2103688 ||| tACTTCTTCAACAATTACCTTAGCACCAGCTATTAACGCCTTATCTTGAACTTTTACCATCTCTTTTATGCCAAAACGTTTTTCTAATTCTCTTTCTAAt > 1:2914987/1‑100 (MQ=255) caaTTACCTTAGCACCAGCTATTAACGCCTTATCTTGAACTTTTACCATCTCTTTTATGCCAAAACGTTTTTCTAATTCTCTTTCTAATGCTTTATCAcc < 1:3772918/100‑1 (MQ=255) ctatgccgacgcCTTATCTTGAACTTTTACCATCTCTTTTATGCCAAAACGTTTTTCTAATTCTCTTTCTAATGCTTTATCACCTATCACTTTCACACTc > 1:1500857/10‑100 (MQ=255) aTTAACGCCTTATCTTGAACTTTTACCATCTCTTTTATGCCAAAACGTTTTTCTAATTCTCTTTCTAATGCTTTATCACCTATCACTTTCACACTCATgg < 1:3586963/100‑2 (MQ=255) aTTAACGCCTTATCTTGAACTTTTACCATCTCTTTTATGCCAAAACGTTTTTCTAATTCTCTTTCTAATGCTTTATCACCTATCACTGTCACACTCATgt < 1:4896923/100‑2 (MQ=255) tATCTTGAACTTTTACCATCTCTTTTATGCCAAAACGTTTTTCTAATTCTCTTTCTAATGCTTTATCACCTATCACTTTCACACTCATGAACTATAtcct < 1:4638998/100‑1 (MQ=255) tGAACTTTTCCCATCTCTTTTATGCCAAAACGTTTTTCTAATTCTCTTTCTAATGCTTTATCACCTATCACTTTCACACTCATGAACTATATCCTCCACg < 1:4409854/100‑1 (MQ=255) tGAACTTTTACCATCTCTTTTATGCCAAAACGTTTTTCTAATTCTCTTTCTAATGCTTTATCACCTATCACTTTCACACTCATGAACTATATCCTCCACg > 1:4657956/1‑100 (MQ=255) ||| TACTTCTTCAACAATTACTTTAGCACCAGCAATTAGCGCCCTATCTTGAACTTTTAACATCGCTTGAGTTCCGAAACGATTTTCTAATTCTCTTTCTAATGCTTTATCACCTATCACTTTCACACTCATGAACTATATCCTCCACG > NC_007793/2103543‑2103688 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |