Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	2,102,230	2 bp→TT	coding (632‑633/645 nt)	SAUSA300_RS10605 ←	phage tail protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	2,102,230	0	G	T	100.0%	30.8 / NA	12	G211G (GGC→GGA)	SAUSA300_RS10605	phage tail protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (4/8);  total (4/8)
*	NC_007793	2,102,231	0	C	T	100.0%	31.1 / NA	12	G211D (GGC→GAC)	SAUSA300_RS10605	phage tail protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (4/8);  total (4/8)

CAACTTTTAGTGTTTTAAAACTATCTGGTATATTAACCGACTTTATCTCAGTTTCCGATGAAGCCGGTTGCGTTACAAAGTTTCGCCGTTATCCTCTGTCACGTTTCCAGTATATTCTTCGCCTAAAATTTTCTTTAAGAAAGCCTCTTCGCCTTTTTCACCATTTCCAC  >  NC_007793/2102146‑2102315                                                                                     ||                                                                                     cAACTTTAAGTGTTTTAATGCTATCTGGTATATTAACCGACTTTACCGCAGTTTCCGATGAAGCCGGTTTCGTTACAAAGTTTCTTCGTTATCCTCTGTc                                                                        <  1:2693782/100‑1 (MQ=255)   tcTTTAAGTGTTTTAATGCTATCTGGTATATTAACCGACTTTACCGCAGTTTCCGATGAAGCCGGTTTCGTTACAAAGTTTCTTCGTTATCCTCTGTCAc                                                                      <  1:4007041/99‑1 (MQ=255)   aCTTTAAGTGTTTTAATGCTATCTGGTATATTAACCGACTTTACCGCAGTTTCCGATGAAGCCGGTTTCGTTACAAAGTTTCTTCGTTATCCTCTGTTAc                                                                      <  1:4311062/100‑1 (MQ=255)   aCTTTAAGTGTTTTAATGCTATCTGGTATATTAACCGACTTTACCGCAGTTTCCGATGAAGCCGGTTTCGTTACAAAGTTTCTTCGTTATCCTCTGTCAc                                                                      <  1:1666368/100‑1 (MQ=255)       taaGTGTTTTAATGCTATCTGGTATATTAACCGACTTTACCGCAGTTTCCGATGAAGCCGGTTTCGTTACAAAGTTTCTTCGTTATCCTCTGTCACGttg                                                                  <  1:624/98‑2 (MQ=255)                   tgcTATCTGGTATATTAACCGACTTTACCGCAGTTTCCGATGAAGCCGGTTTCGTTACAAAGTTTCTTCGTTATCCTCTGTCACGTTTCCAGTATAttct                                                      >  1:5759861/3‑100 (MQ=255)                                   aaCCGACTTTACCGCAGTTTCCGATGAAGCCGGTTTCGTTACAAAGTTTCTTCGTTATCCTCTGTCACGTTTCCAGTATATTCTTCGCCTAAAATTTTCt                                      <  1:3625245/100‑1 (MQ=255)                                            taccgcAGTTTCCGATGAAGCCGGTTTCGTTACAAAGTTTCTTCGTTATCCTCTGTCACGTTTCCAGTATATTCTTCGCCTAAAATTTTCTTTAAGAAAg                             >  1:3371061/6‑100 (MQ=255)                                             gccgcAGTTTCCGATGAAGCCGGTTTCGTTACAAAGTTTCTTCGTTATCCTCTGTCACGTTTCCAGTATATTCTTCGCCTAAAATTTTCTTTAAGAAAGc                            >  1:22247/5‑100 (MQ=255)                                                                      tcGTTACAAAGTTTCTTCGTTATCCTCTGTCACGTTTCCAGTATATTCTTCGCCTAAAATTTTCTTTAAGAAAGCCTCTTCGCCTTTTTCAccgtcagat   >  1:2191661/2‑93 (MQ=255)                                                                       cGTTACAAGGTTTCTTCGTTATCCTCTGTCACGTTTCCAGTATATTCTTCGCCTAAAATTTTCTTTAAGAAAGCCTCTTCGCCTTTTTCAccgtcgccac  <  1:1436679/100‑9 (MQ=255)                                                                       cGTTACAAAGTTTCTTCGTTATCCTCTGTCACGTTTCCAGTATATTCTTCGCCTAAAATTTTCTTTAAGAAAGCCTCTTCGCCTTTTTCAccgtcgccac  <  1:757735/100‑9 (MQ=255)                                                                                     ||                                                                                     CAACTTTTAGTGTTTTAAAACTATCTGGTATATTAACCGACTTTATCTCAGTTTCCGATGAAGCCGGTTGCGTTACAAAGTTTCGCCGTTATCCTCTGTCACGTTTCCAGTATATTCTTCGCCTAAAATTTTCTTTAAGAAAGCCTCTTCGCCTTTTTCACCATTTCCAC  >  NC_007793/2102146‑2102315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑