| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,102,164 | 2 bp→TG | intergenic (‑262/+53) | SAUSA300_RS10600 ← / ← SAUSA300_RS10605 | hypothetical protein/phage tail protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,102,164 | 0 | A | T | 100.0% | 28.8 / NA | 12 | intergenic (‑262/+54) | SAUSA300_RS10600/SAUSA300_RS10605 | hypothetical protein/phage tail protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (1/11); total (1/11) | |||||||||||
| * | NC_007793 | 2,102,165 | 0 | A | G | 100.0% | 27.2 / NA | 12 | intergenic (‑263/+53) | SAUSA300_RS10600/SAUSA300_RS10605 | hypothetical protein/phage tail protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (1/11); total (1/11) | |||||||||||
CTGTTGTGTATTTCAATAACTTACTTTGATTAGATGGCTCTACTACAACATTTAAATCATATGTGTTGCCAACTTTTAGTGTTTTAAAACTATCTGGTATATTAACCGACTTTATCTCAGTTTCCGATGAAGCCGGTTGCGTTACAAAGTTTCGCCGTTATCCTCTGTCACGTTT > NC_007793/2102077‑2102251 || cTGTTGTGTATTTCAATAACTTACTTTGATTAGATGGCTCTACTACAACATTTAAATCGTATGTGTCGCCAACTTTAAGTGTTTTAATGCTATCTGGtat < 1:4611557/100‑1 (MQ=255)cTGTTGTGTATTTCAATAACTTACTTTGATTAGATGGCTCTACTACAACATTTAAATCGTATGTGTCGCCAACTTTAAGTGTTTTAATGCTATCTGGtat < 1:4946231/100‑1 (MQ=255) gttgtGTATTTCAATAACTTACTTTGATTAGATGGCTCTACTACAACATTTAAATCGTATGTGTCGCCAACTTTAAGTGTTTTAATGCTATCTGGTatat > 1:3739369/1‑100 (MQ=255) acttacttTGATTAGATGGCTCTACTACAACATTTAAATCGTATGTGTCGCCAACTTTAAGTGTTTTAATGCTATCTGGTATATTAACCGACTTTaccgc < 1:5370268/100‑5 (MQ=255) acttacttTGATTAGATGGCTCTACTACAACATTTAAATCGTATGTGTCGCCAACTTTAAGTGTTTCAATGCTATCTGGTATATTAACCGACTTTaccgc < 1:2717326/100‑5 (MQ=255) tacttTGATTAGATGGCTCTACTACAACATTTAAATCGTATGTGTCGCCAACTTTAAGTGTTTTAATGCTATCTGGTATATTAACCGACTTTACCGCAga < 1:1400040/100‑2 (MQ=255) tgtgTCGCCAACTTTAAGTGTTTTAATGCTATCTGGTATATTAACCGACTTTACCGCAGTTTCCGATGAAGCCGGTTTCGTTACAAAGTTTcttcgtact < 1:4923419/100‑9 (MQ=255) cAACTTTAAGTGTTTTAATGCTATCTGGTATATTAACCGACTTTACCGCAGTTTCCGATGAAGCCGGTTTCGTTACAAAGTTTCTTCGTTATCCTCTGTc < 1:2693782/100‑1 (MQ=255) tcTTTAAGTGTTTTAATGCTATCTGGTATATTAACCGACTTTACCGCAGTTTCCGATGAAGCCGGTTTCGTTACAAAGTTTCTTCGTTATCCTCTGTCAc < 1:4007041/99‑1 (MQ=255) aCTTTAAGTGTTTTAATGCTATCTGGTATATTAACCGACTTTACCGCAGTTTCCGATGAAGCCGGTTTCGTTACAAAGTTTCTTCGTTATCCTCTGTTAc < 1:4311062/100‑1 (MQ=255) aCTTTAAGTGTTTTAATGCTATCTGGTATATTAACCGACTTTACCGCAGTTTCCGATGAAGCCGGTTTCGTTACAAAGTTTCTTCGTTATCCTCTGTCAc < 1:1666368/100‑1 (MQ=255) taaGTGTTTTAATGCTATCTGGTATATTAACCGACTTTACCGCAGTTTCCGATGAAGCCGGTTTCGTTACAAAGTTTCTTCGTTATCCTCTGTCACGttg < 1:624/98‑2 (MQ=255) || CTGTTGTGTATTTCAATAACTTACTTTGATTAGATGGCTCTACTACAACATTTAAATCATATGTGTTGCCAACTTTTAGTGTTTTAAAACTATCTGGTATATTAACCGACTTTATCTCAGTTTCCGATGAAGCCGGTTGCGTTACAAAGTTTCGCCGTTATCCTCTGTCACGTTT > NC_007793/2102077‑2102251 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |