| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 1,586,045 | 2 bp→CG | coding (62‑63/303 nt) | SAUSA300_RS07790 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 1,586,045 | 0 | G | C | 100.0% | 30.8 / NA | 14 | S21R (AGC→AGG) | SAUSA300_RS07790 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (1/13); total (1/13) | |||||||||||
| * | NC_007793 | 1,586,046 | 0 | C | G | 100.0% | 30.7 / NA | 14 | S21T (AGC→ACC) | SAUSA300_RS07790 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (1/13); total (1/13) | |||||||||||
AATCTCCGTCGATAACTCCTATTGATGAGAAAAGCAAAATATCAAATTTACTTTCTCCCTTAATTTCTTTCGCTAATTCATACAATTCTCCGCTTTTTTCAGATAATAAGTCTTTTACTTCTTCCTGAGTCATGTCTTTATATTTTTTAGTCATTGTTGACTTCCTCCTCGTTT > NC_007793/1585954‑1586127 || aatCTCCGTCGATAACTCCTATTGATGAGAAAAGCAAAATATCAAATTTACTTTCTCCCTTAATTTCTTTCGCTAATTCATACAATTCTGCCGTTTTTTc < 1:1968931/100‑1 (MQ=255)aatCTCCGTCGATAACTCCTATTGATGAGAAAAGCAAAATATCAAATTTACTTTCTCCCTTAATTTCTTTCGCTAATTCATACAATTCTGCCGTTTTTTc < 1:4658337/100‑1 (MQ=255) aaaaGCAAAATATCAAATTTACTTTCTCCCTTAATTTCTTTCGCTAATTCATACAATTCTGCCGTTTTTCCAGATAATAAGTCTTTTATTTCTTCCTgct < 1:4812023/100‑3 (MQ=255) aaaGCAAAATATCAAATTTACTTTCTCCCTTAATTTCTTTCGCTAATTCATACAATTCTGCCGTTTTTTCAGATAATAAGTCTTTTATTTCTTCCTGCGt < 1:5413007/100‑1 (MQ=255) aGCAAAATATCAAATTTACTTTCTCCCTTAATTTCTTTCGCTAATTCATACAATTCTGCCGTTTTTTCAGATAATAAGTCTTTTATTTCTTCCTGCGtgt < 1:2897194/100‑3 (MQ=255) cAAAATATCAAATTTACTTTCTCCCTTAATTTCTTTCGCTAATTCATACAATTCTGCCGTTTTTTCAGATAATAAGTCTTTTATTTCTTCCTGCGTCATg < 1:1888957/100‑1 (MQ=255) aaaaTATCAAATTTACTTTCTCCCTTAATTTCTTTCGCTAATTCATACAATTCTGCCGTTTTTTCAGATAATAAGTCTTTTATTTCTTCCTGCGTCATGt < 1:1343670/100‑1 (MQ=255) aaaaTATCAAATTTACTTTCTCCCTTAATTTCTTTCGCTAATTCATACAATTCTGCCGTTTTTTCAGATAATAAGTCTTTTATTTCTTCCTGCGTCATGt < 1:4747142/100‑1 (MQ=255) atatCAAATTTACTTTCTCCCTTAATTTCTTTCGCTAATTCATACAATTCTGCCGTTTTTTCAGATAATAAGTCTTTTATTTCTTCCTGCGTCATGTCtt < 1:3536375/100‑1 (MQ=255) tatCAAATTTACTTTCTCCCTTAATTTCTTTCGCTAATTCATACAATTCTGCCGTTTTTTCAGATAATAAGTCTTTTATTTCTTCCTGCGTCATGTCttt < 1:1153941/100‑1 (MQ=255) cccTTAATTTCTTTCGCTAATTCATACAATTCTGCCGTTTTTTCAGATAATAAGTCTTTTATTTCTTCCTGCGTCATGTCTTTATAATTTTTAGTCAtgg > 1:1552225/1‑98 (MQ=25) ccTTAATTTCTTTCGCTAATTCATACAATTCTGCCGTTTTTTCAGATAATAAGTCTTTTATTTCTTCCTGCGTCATGTCTTTATAATTTTTAGTCAtgga < 1:2831839/100‑4 (MQ=25) tAATTCATACAATTCTGCCGTTTTTTCAGATAATAAGTCTTTTATTTCTTCCTGCGTCATGTCTTTATAATTTTTAGTCATGGTTGACTtcctccgagag < 1:2200744/100‑6 (MQ=18) aaTTCATACAATTCTGCCGTTTTTTCAGATAATAAGTCTTTTATTTCTTCCTGCGTCATGTCTTTATAATTTTTAGTCATGGTTGACTtcctccgttttt < 1:447537/100‑7 (MQ=18) || AATCTCCGTCGATAACTCCTATTGATGAGAAAAGCAAAATATCAAATTTACTTTCTCCCTTAATTTCTTTCGCTAATTCATACAATTCTCCGCTTTTTTCAGATAATAAGTCTTTTACTTCTTCCTGAGTCATGTCTTTATATTTTTTAGTCATTGTTGACTTCCTCCTCGTTT > NC_007793/1585954‑1586127 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |