Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	2,495,600	C→T	M124I (ATG→ATA)	SAUSA300_RS12830 ←	phage infection protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	2,495,600	0	C	T	100.0%	17.1 / NA	8	M124I (ATG→ATA)	SAUSA300_RS12830	phage infection protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (1/7);  total (1/7)

TCCCCATTTTTTGTTTCATTTGTTGAACCACTTGTGGCGGAATTTCACCTGAAGCAACTTTTTGTTGCATTTCTTCTTTTTTACTATCCATAACTACTTTTTGTGTTTTACTCATAGCATCTTTTGAAAAGTCTTTATCAATAATAGCTACTCCAA  >  NC_007793/2495533‑2495688                                                                    |                                                                                         tgcccATTTTTTGTTTCATTTGTTGAACCACTTGTGGCGGAATTTCACCTGAAGCAACTTTTTGTTGTATTTCTTCTTTTTTACTATCCATAACTACttt                                                          >  1:2910536/3‑100 (MQ=255)  tcccATTTTTTGTTTCATTTGTTGAACCACTTGTGGCGGAATTTCACCTGAAGCAACTTTTTGTTGTATTTCTTCTTTTTTACTATCCATAactactgag                                                         <  1:4604362/99‑4 (MQ=255)          tttGTTTCATTTGTTGAACCACTTGTGGCGGAATTTCACCTGAAGCAACTTTTTGTTGTATTTCTTCTTTTTTACTATCCATAACTACTTTTTGTGtttt                                                 <  1:5678736/100‑1 (MQ=255)                tCATTTGTTGAACCACTTGTGGCGGAATTTCACCTGAAGCAACTTTTTGTTGTATTTCTTCTTTTTTACTATCCATAACTACTTTTTGTGTTTTACTCAt                                           <  1:2391581/100‑1 (MQ=255)                   tttGTTGAACCACTTGTGGCGGAATTTCACCTGAAGCAACTTTTTGTTGTATTTCTTCTTTTTTACTATCCATAACTACTTTTTGTGTTTTACTCATAGc                                        <  1:1186003/100‑1 (MQ=255)                     tgttgAACCACTTGTGGCGGAATTTCACCTGAAGCAACTTTTTGTTGTATTTCTTCTTTTTTACTATCCATAACTACTTTTTGTGTTTTACTCATAGCAt                                      <  1:840779/100‑1 (MQ=255)                      gttgAACCACTTGTGGCGGAATTTCACCTGAAGCAACTTTTTGTTGTATTTCTTCTTTTTTACTATCCATAACTACTTTTTGTGTTTTACTCATAGCAtg                                     <  1:3261277/100‑2 (MQ=255)                                                         aCTTTTTGTTGTATTTCTTCTTTTTTACTATCCATAACTACTTTTTGTGTTTTACTCATAGCATCTTTTGAAAAGTCTTTATCAATAATAGCTACTCCaa  <  1:3786492/100‑1 (MQ=255)                                                                    |                                                                                         TCCCCATTTTTTGTTTCATTTGTTGAACCACTTGTGGCGGAATTTCACCTGAAGCAACTTTTTGTTGCATTTCTTCTTTTTTACTATCCATAACTACTTTTTGTGTTTTACTCATAGCATCTTTTGAAAAGTCTTTATCAATAATAGCTACTCCAA  >  NC_007793/2495533‑2495688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑