Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	2,283,738	A→T	pseudogene (1956/7437 nt)	SAUSA300_RS11625 ←	methicillin resistance protein FmtB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	2,283,738	0	A	T	100.0%	12.6 / NA	6	pseudogene (1956/7437 nt)	SAUSA300_RS11625	methicillin resistance protein FmtB
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (1/5);  total (1/5)

ATTATCTTTTTCAGTTGTGACACCTTGTGCTGTAGTTTGTTTATTAATTTCAGCGATTGCATTATTTTTATCATTGTTAATTTTAGTTACAAGTGCTGCAACTTCATCTTGCGTAACTTTTTTACTTTGTTGTGCTGCTGT  >  NC_007793/2283687‑2283827                                                    |                                                                                          aTTATCTTTTTCAGTTGTGACACCTTGTGCTGTAGTTTGTTTATTAATTTCTGCGATTGCATTATTTTTATCATTGTTAATTTTAGTTACAAGTGCTGCa                                           <  1:1373422/100‑1 (MQ=255)                tgtgACACCTTGTGCTGTAGTTTGTTTATTAATTTCTGCGATTGCATTATTTTTATCATTGTTAATTTTAGTTACAAGTGCTGCAACTTCATCTTGCGTa                            <  1:5638476/100‑1 (MQ=255)                              cTGTAGTTTGTTTATTAATTTCTGCGATTGCATTATTTTTATCATTGTTAATTTTAGTTACAAGTGCTGCAACTTCATCTTGCGTAACTTTTTTACTttg              >  1:4444485/1‑100 (MQ=255)                                      tgtttATTAATTTCTGCGATTGCATTATTTTTATCATTGTTAATTTTAGTTACAAGTGCTGCAACTTCATCTTGCGTAACTTTTTTACTTTGTTGtgctg      <  1:2029430/100‑1 (MQ=255)                                      tgtttATTAATTTCTGCGATTGCATTATTTTTATCATTGTTAATTTTAGTTACAAGTGCTGCAACTTCATCTTGCGTAACTTTTTTACTTTGTTGtgctg      <  1:5327471/100‑1 (MQ=255)                                          tattaATTTCTGCGATTGCATTATTTTTATCATTGTTAATTTTAGTTACAAGTGCTGCAACTTCATCTTGCGTAACTTTTTTACTTTGTTGTGCTGCTGt  <  1:5650400/100‑1 (MQ=255)                                                    |                                                                                          ATTATCTTTTTCAGTTGTGACACCTTGTGCTGTAGTTTGTTTATTAATTTCAGCGATTGCATTATTTTTATCATTGTTAATTTTAGTTACAAGTGCTGCAACTTCATCTTGCGTAACTTTTTTACTTTGTTGTGCTGCTGT  >  NC_007793/2283687‑2283827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑