| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,283,092 | C→A | pseudogene (2602/7437 nt) | SAUSA300_RS11625 ← | methicillin resistance protein FmtB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,283,092 | 0 | C | A | 100.0% | 25.3 / NA | 11 | pseudogene (2602/7437 nt) | SAUSA300_RS11625 | methicillin resistance protein FmtB |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (3/8); total (3/8) | |||||||||||
CAACTTCCTGTTTTGATTTAACAACTTGGATGTCATGTAAACCTTGCTTTTGAGCTGCATCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTT > NC_007793/2283011‑2283187 | cAACTTCCTGTTTTGATTTAACAACTTGGATGTCATGTAAACCTTGCTTTTGAGCTGCATCTACTGCTGCATCAGCTTCTGATACTTCTTCATTTGTTGc < 1:2112941/100‑1 (MQ=255)cAACTTCCTGTTTTGATTTAACAACTTGGATGTCATGTAAACCTTGCTTTTGAGCTGCATCTACTGCTGCATCAGCTTCTGATACTTCTTCATTTGTTGc < 1:4914541/100‑1 (MQ=255) cTTCCTGTTTTGATTTAACAACTTGGATGTCATGTAAACCTTGCTTTTGAGCTGCATCTACTGCTGCATCAGCTTCTGATACTTCTTCATTTGTTGCagg < 1:2924657/100‑3 (MQ=255) ttCCTGTTTTGATTTAACAACTTGGATGTCATGTAAACCTTGCTTTTGAGCTGCATCTACTGCTGCATCAGCTTCTGATACTTCTTCATTTGTTGCAtta < 1:2154486/100‑2 (MQ=255) tGTCATGTAAACCTTGCTTTTGAGCTGCATCTACTGCTGCATCAGCTTCTGATACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCt < 1:3434529/100‑1 (MQ=255) gTAAACCTTGCTTTTGAGCTGCATCTACTGCTGCATCAGCTTCTGATACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGt > 1:3011046/1‑100 (MQ=255) gCATCTACTGCTGCATCAGCTTCTGATACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCAt > 1:2295253/1‑100 (MQ=255) cTACTGCTGCATCAGCTTCTGATACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATtata < 1:1522912/100‑1 (MQ=255) gctgcATCAGCTTCTGATACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCac < 1:1464961/100‑2 (MQ=255) gctgcATCAGCTTCTGATACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCAt < 1:5667591/100‑1 (MQ=255) tCTGATACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTtttgttt > 1:45326/1‑100 (MQ=255) | CAACTTCCTGTTTTGATTTAACAACTTGGATGTCATGTAAACCTTGCTTTTGAGCTGCATCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTT > NC_007793/2283011‑2283187 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |