| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,282,387 | A→G | pseudogene (3307/7437 nt) | SAUSA300_RS11625 ← | methicillin resistance protein FmtB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,282,387 | 0 | A | G | 100.0% | 26.9 / NA | 12 | pseudogene (3307/7437 nt) | SAUSA300_RS11625 | methicillin resistance protein FmtB |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (1/11); total (1/11) | |||||||||||
GCTTTTTTAGCCGCTTCAACTTCCGCATTTGTATGTGCTGCATCTATTGCGGCATCAGCTGTTGTTTTTTCAGTTTGAACTTGTTATTTAGCAGCTGCTTTTTCTTCAGTTGTTGAGCCGTTATTTCCATCAATTGCTGTTTCTTGAGCTTGTACTTTATCTGCAATTGCTTGTTTTGCTG > NC_007793/2282302‑2282482 | gctTTTTTAGCCGCTTCAACTTCCGCATTTGTATGTGCTGCATCTATTGCGGCATCAGCTGTTGTTTTTTCAGTTTGAACTTGTTGTTTAGCAGCTGCtt > 1:1857028/1‑100 (MQ=255) cGCTTCAACTTCCGCATTTGTATGTGCTGCATCTATTGCGGCATCAGCTGTTGTTTTTTCAGTTTGAACTTGTTGTTTAGCAGCTGCTTTTTCTTCAgtt < 1:1701255/100‑1 (MQ=255) tCAACTTCCGCATTTGTATGTGCTGCATCTATTGCGGCATCAGCTGTTGTTTTTTCAGTTTGAACTTGTTGTTTAGCAGCTGCTTTTTCTTCAGttgttg < 1:408363/100‑1 (MQ=255) aCTTCCGCATTTGTATGTGCTGCATCTATTGCGGCATCAGCTGTTGTTTTTTCAGTTTGAACTTGTTGTTTAGCAGCTGCTTTTTCTTCAGttgttggca < 1:110633/100‑4 (MQ=255) tCCGCATTTGTATGTGCTGCATCTATTGCGGCATCAGCTGTTGTTTTTTCAGTTTGAACTTGTTGTTTAGCAGCTGCTTTTTCTTCAGTTGTTGAGCCGt < 1:2223930/100‑1 (MQ=255) tCCGCATTTGTATGTGCTGCATCTATTGCGGCATCAGCTGTTGTTTTTTCAGTTTGAACTTGTTGTTTAGCAGCTGCTTTTTCTTCAGTTGTTGAGCCGt < 1:3449129/100‑1 (MQ=255) cGCATTTGTATGTGCTGCATCTATTGCGGCATCAGCTGTTGTTTTTTCAGTTTGAACTTGTTGTTTAGCAGCTGCTTTTTCTTCAGTTGTTGAGCCGttg < 1:4960797/100‑2 (MQ=255) tccgaTCTATTGCGGCATCAGCTGTTGTTTTTTCAGTTTGAACTTGTTGTTTAGCAGCTGCTTTTTCTTCAGTTGTTGAGCCGTTATTTCCATCAATTGc < 1:4911165/96‑1 (MQ=255) aTCTGTTGCGGCATCAGCTGTTGTTTTTTCAGTTTGAACTTGTTGTTTAGCAGCTGCTTTTTCTTCAGTTGTTGAGCCGTTATTTCCATCAATTGCTGtt < 1:4804460/100‑1 (MQ=255) ttGCGGCATCAGCTGTTGTTTTTTCAGTTTGAACTTGTTGTTTAGCAGCTGCTTTTTCTTCAGTTGTTGAGCCGTTATTTCCATCAATTGCTGTTTCTTg < 1:4579894/100‑1 (MQ=255) cATCAGCTGTTGTTTTTTCAGTTTGAACTTGTTGTTTAGCAGCTGCTTTTTCTTCAGTTGTTGAGCCGTTATTTCCATCAATTGCTGTTTCTTGAGCtga < 1:5166360/100‑3 (MQ=255) aaCTTGTTGTTTAGCAGCTGCTTTTTCTTCAGTTGTTGAGCCGTTATTTCCATCAATTGCTGTTTCTTGAGCTTGTACTTTATCTGCAATTGCTTGtttt < 1:694727/100‑1 (MQ=255) ttgttgTTTAGCAGCTGCTTTTTCTTCAGTTGTTGAGCCGTTATTTCCATCAATTGCTGTTTCTTGAGCTTGTACTTTATCTGCAATTGCTTGTTTtgct > 1:5340435/1‑100 (MQ=255) tgttgtTTAGCAGCTGCTTTTTCTTCAGTTGTTGAGCCGTTATTTCCATCAATTGCTGTTTCTTGAGCTTGTACTTTATCTGCAATTGCTTGTTTtgctg < 1:3841341/100‑1 (MQ=255) | GCTTTTTTAGCCGCTTCAACTTCCGCATTTGTATGTGCTGCATCTATTGCGGCATCAGCTGTTGTTTTTTCAGTTTGAACTTGTTATTTAGCAGCTGCTTTTTCTTCAGTTGTTGAGCCGTTATTTCCATCAATTGCTGTTTCTTGAGCTTGTACTTTATCTGCAATTGCTTGTTTTGCTG > NC_007793/2282302‑2282482 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |