| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,249,009 | A→T | intergenic (‑396/+3) | SAUSA300_RS11480 ← / ← SAUSA300_RS11485 | hypothetical protein/ATP‑grasp domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,249,009 | 0 | A | T | 80.0% | 21.2 / 2.1 | 15 | intergenic (‑396/+3) | SAUSA300_RS11480/SAUSA300_RS11485 | hypothetical protein/ATP‑grasp domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base A (0/3); new base T (0/12); total (0/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.75e-01 | |||||||||||
AAAAAAGCTTGTTACAAACGCATATTCAGTCAACTACTGGCAACACAACATTGTAGCGCCTTATGTTCCGAACTCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCTTGATTTA > NC_007793/2248938‑2249105 | aaaaaaGCTTGTTACAAACGCATATTCAGTCAACTACTGGCAACACAACATTGTAGCGCCTTATGTTCCGAACTCTAATAGTGTTCAAGTTCAGccacgt < 1:4890737/100‑6 (MQ=255) cGCATATTCAGTCAACTACTGGCAACACAACATTGTAGCGCCTTATGTTCCGAACTCTAATAGTGTTCAAGTTCAGCTAGAAATGCGCGTTCATTCTCCa < 1:1195993/100‑1 (MQ=255) cGCATATTCAGTCAACTACTGGCAACACAACATTGTAGCGCCGTATGTTCCGAACTCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCa < 1:5487965/100‑1 (MQ=255) acgtgtgctcttCCGATCTCTAGTAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGcc < 1:753683/90‑1 (MQ=255) acgtgtgctcttCCGATCTCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGcc < 1:2224712/90‑1 (MQ=255) cgtgtgctcttCCGATCTCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCa < 1:2482913/91‑1 (MQ=255) gtgtgctcttCCGATCTCTAACAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCaa < 1:1847005/92‑1 (MQ=255) tgtgctcttCCGATCTCTAGTAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCaaa < 1:1226613/93‑1 (MQ=255) gtgctcttCCGATCTCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAAc < 1:1472137/94‑1 (MQ=255) tcttCCGATCTTT‑ATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCTTgc < 1:5338888/98‑2 (MQ=255) tcttCCGATCTCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCTTg < 1:3325133/98‑1 (MQ=255) ttCCGATCTCTGACAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCTTGAt < 1:551735/100‑1 (MQ=255) ttCCGATCTCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCTTGAt < 1:5295276/100‑1 (MQ=255) ccGATCTCTAATGGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCTTGAttt < 1:3533524/100‑1 (MQ=255) cGATCTCTGATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCTTGATTTa < 1:5316005/100‑1 (MQ=255) | AAAAAAGCTTGTTACAAACGCATATTCAGTCAACTACTGGCAACACAACATTGTAGCGCCTTATGTTCCGAACTCTAATAGTGTTCAAGTTCAGCTAAAAATGCGCGTTCATTCTCCAGTACTGTTTCTTTTGAATCACCATGCCAAATACAGCCAAACCTTGATTTA > NC_007793/2248938‑2249105 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |