Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_007793 2,230,768 C→T K138K (AAG→AAA)  SAUSA300_RS11390 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077932,230,7680CT99.8% 1209.4 / NA 413K138K (AAG→AAA) SAUSA300_RS11390hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base T (122/290);  total (122/291)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 418 total aligned reads displayed.

CACGTTCGCCACCAATCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGCTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCACGATCGGATCCTTCATATGCTGAAA  >  NC_007793/2230671‑2230860
                                                                                                 |                                                                                            
cACGTTCGCCACCAATCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGttt                                                                                            <  1:2237786/100‑1 (MQ=255)
cACGTTCGCCACCAATCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGttt                                                                                            <  1:2790166/100‑1 (MQ=255)
  cGTTCGCCACCAATCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTaa                                                                                          <  1:5431092/100‑1 (MQ=255)
   gTTCGCCACCAATCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTaag                                                                                         <  1:576828/100‑2 (MQ=255)
       gCCACCAATTTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATatgc                                                                                     <  1:2893978/100‑1 (MQ=255)
       gCCACCAATCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATatgc                                                                                     <  1:5458830/100‑1 (MQ=255)
       gCCACCAATCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATatgc                                                                                     <  1:1566816/100‑1 (MQ=255)
       gCCACCAATCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATatgc                                                                                     <  1:740710/100‑1 (MQ=255)
       gCCACCAATCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATatgc                                                                                     <  1:863945/100‑1 (MQ=255)
        ccaccaATCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAatgggta                                                                                    <  1:5161871/100‑6 (MQ=255)
        ccaccaATCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATatgca                                                                                    <  1:2503614/100‑1 (MQ=255)
         caccaATCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATatgcat                                                                                   <  1:1402764/100‑1 (MQ=255)
         caccaATCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATatgcat                                                                                   <  1:5249253/100‑1 (MQ=255)
             aaTCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTGCTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCt                                                                               <  1:3587140/100‑1 (MQ=255)
             aaTCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCt                                                                               <  1:5057564/100‑1 (MQ=255)
             aaTCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCt                                                                               <  1:394067/100‑1 (MQ=255)
             aaTCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCt                                                                               <  1:1102314/100‑1 (MQ=255)
             aaTCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGATCCTTACAGGTACACATACATGTTTAATATGTATGCCt                                                                               <  1:4738924/100‑1 (MQ=255)
              aTCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTa                                                                              <  1:5722328/100‑1 (MQ=255)
              aTCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTa                                                                              <  1:1034957/100‑1 (MQ=255)
               tCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTAt                                                                             <  1:4944086/100‑1 (MQ=255)
                  ttttCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTTAGGTCCTTACAGGTACACATACATGTTTAATATGCATTCCTATTaa                                                                          >  1:4226976/1‑100 (MQ=255)
                  ttttCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACCGGTACACATACATGTTTAATATGCATGCCTATTaa                                                                          >  1:5117635/1‑100 (MQ=255)
                  ttttCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTCATATGCATGCCTATTaa                                                                          >  1:2990831/1‑100 (MQ=255)
                  ttttCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTaa                                                                          >  1:5676232/1‑100 (MQ=255)
                  ttttCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTaa                                                                          >  1:4116910/1‑100 (MQ=255)
                  ttttCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTaa                                                                          >  1:477667/1‑100 (MQ=255)
                  ttttCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTaa                                                                          >  1:3696007/1‑100 (MQ=255)
                  ttttCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTaa                                                                          >  1:3394955/1‑100 (MQ=255)
                  ttttCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTaa                                                                          >  1:5082113/1‑100 (MQ=255)
                           tAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTGCACATACATGTTTAATATGCATGCCTATTAACGTTTGAcc                                                                 <  1:1778650/100‑1 (MQ=255)
                           tAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGAcc                                                                 <  1:4677605/100‑1 (MQ=255)
                           tAGATGTGGCAATAGTTACAATTGCATGTCCTACTTGCTTTACAGAGGAACTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGAcc                                                                 <  1:3083780/100‑1 (MQ=255)
                            aGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCa                                                                >  1:4291370/1‑100 (MQ=255)
                            aGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCa                                                                >  1:2077502/1‑100 (MQ=255)
                            aGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCa                                                                <  1:3136975/100‑1 (MQ=255)
                              ctgtgGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAat                                                              >  1:5206862/2‑100 (MQ=255)
                                 tgGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATc                                                           <  1:5515348/100‑1 (MQ=255)
                                 tgGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATATTTAATATGCATGCCTATTAACGTTTGACCAATATc                                                           <  1:3039466/100‑1 (MQ=255)
                                        aGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCca                                                    <  1:4634711/100‑1 (MQ=255)
                                         gTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCcag                                                   <  1:4040174/100‑2 (MQ=255)
                                          ttACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCcaca                                                  <  1:2197714/100‑1 (MQ=255)
                                          ttACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCcaca                                                  <  1:4316043/100‑1 (MQ=255)
                                          ttACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCcaca                                                  <  1:3877562/100‑1 (MQ=255)
                                            aCAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCcacaga                                                <  1:4823120/100‑3 (MQ=255)
                                             cAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAgg                                               <  1:4571671/100‑1 (MQ=255)
                                              aaTTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAggg                                              <  1:4509583/100‑2 (MQ=255)
                                                 tGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACa                                           >  1:3797195/1‑100 (MQ=255)
                                                 tGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACa                                           <  1:2391670/100‑1 (MQ=255)
                                                        gcTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGGCCAATATCAATTCCACAAGGCACAGTAatat                                    >  1:5486985/2‑100 (MQ=255)
                                                          tACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGt                                  >  1:2624683/1‑100 (MQ=255)
                                                           aCTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGGCCAATATCAATTCCACAAGGAACAGTAATATGtt                                 >  1:583611/1‑100 (MQ=255)
                                                           aCTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGtt                                 >  1:2109666/1‑100 (MQ=255)
                                                           aCTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGtt                                 >  1:1434507/1‑100 (MQ=255)
                                                           aCTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGtt                                 >  1:131853/1‑100 (MQ=255)
                                                           aCTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGtt                                 >  1:4169883/1‑100 (MQ=255)
                                                           aCTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGtt                                 >  1:161170/1‑100 (MQ=255)
                                                           aCTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGtt                                 >  1:4703001/1‑100 (MQ=255)
                                                           aCTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGtt                                 >  1:1794081/1‑100 (MQ=255)
                                                           aCTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGtt                                 >  1:3568567/1‑100 (MQ=255)
                                                           aCTTGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGCAACAGTAATATGtt                                 >  1:2324034/1‑100 (MQ=255)
                                                           aCTTGCTTTACTGAGGTCCTAACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGtt                                 >  1:1359794/1‑100 (MQ=255)
                                                             ttGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCg                               >  1:2135726/1‑100 (MQ=255)
                                                              tGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGa                              >  1:4445577/1‑100 (MQ=255)
                                                              tGCTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGa                              >  1:5311588/1‑100 (MQ=255)
                                                                cTTTACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCAAcc                            <  1:2446811/100‑1 (MQ=255)
                                                                 tttACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCa                           <  1:790144/100‑1 (MQ=255)
                                                                 tttACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCa                           <  1:3659209/100‑1 (MQ=255)
                                                                 tttACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCa                           <  1:898807/100‑1 (MQ=255)
                                                                 tttACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCa                           <  1:4861754/100‑1 (MQ=255)
                                                                 tttACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCa                           <  1:3952068/100‑1 (MQ=255)
                                                                 tttACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCa                           <  1:3814349/100‑1 (MQ=255)
                                                                 tttACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCa                           <  1:3756980/100‑1 (MQ=255)
                                                                 tttACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCa                           <  1:1223951/100‑1 (MQ=255)
                                                                 tttACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCa                           <  1:1269275/100‑1 (MQ=255)
                                                                 tttACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCa                           <  1:1505761/100‑1 (MQ=255)
                                                                 tttACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCa                           <  1:3243316/100‑1 (MQ=255)
                                                                 tttACTGAGGTCCTTACAGGTACACATACATGTTTAATATGAATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCa                           <  1:5596703/100‑1 (MQ=255)
                                                                 tttACTGAGGTCCTTACAGGTACACATACACGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCa                           <  1:191777/100‑1 (MQ=255)
                                                                  ttACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCat                          <  1:5403152/100‑2 (MQ=255)
                                                                  ttACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCag                          <  1:948633/100‑2 (MQ=255)
                                                                  ttACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCAc                          <  1:3452830/100‑1 (MQ=255)
                                                                  ttACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCAc                          <  1:2537402/100‑1 (MQ=255)
                                                                  ttACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCAc                          <  1:3222751/100‑1 (MQ=255)
                                                                   tACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCACg                         <  1:671534/100‑1 (MQ=255)
                                                                   tACTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCACg                         <  1:2281884/100‑1 (MQ=255)
                                                                    aCTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCACGa                        <  1:171745/100‑1 (MQ=255)
                                                                     cTGAGGTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCACGAt                       <  1:1468504/100‑1 (MQ=255)
                                                                          gTCCTTACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCACGaggcgtg                  <  1:2935142/100‑7 (MQ=255)
                                                                               tACAGGTACACATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCACGATCGGATCCTTc             >  1:3980614/1‑100 (MQ=255)
                                                                                 cAGGTACACATACATGTTTAATATGCATGCCTATCAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCACGATCGGATCCTTCag           <  1:1175233/100‑2 (MQ=255)
                                                                                      acacATACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCACGATCGGATCCTTCATATGCt      <  1:1813192/100‑1 (MQ=255)
                                                                                       cacaTACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCTCGATCGGATCCTTCATATGCTg     <  1:2155653/100‑1 (MQ=255)
                                                                                       cacaTACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCACGATCGGATCCTTCATATGCtt     <  1:3267527/100‑2 (MQ=255)
                                                                                       cacaTACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCACGATCGGATCCTTCATATGCTg     <  1:1941958/100‑1 (MQ=255)
                                                                                       cacaTACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCACGATCGGATCCTTCATATGCTg     <  1:2750500/100‑1 (MQ=255)
                                                                                       cacaTACATGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCACGATCGGATCCTTCATATGCTg     <  1:3533572/100‑1 (MQ=255)
                                                                                       cacaTACATGTTTAATATGCATGCCTATTAACGTTTGACCAACATCAATTCCACAAGGAACAGTAATATGTTCGACCACGATCGGATCCTTCATATGCTg     <  1:1848185/100‑1 (MQ=255)
                                                                                        acatacatGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCACGATCGGATCCTTCATATGCTgg    <  1:5334580/100‑2 (MQ=255)
                                                                                          atacatGTTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTGCGACCACGATCGGATCCTTCATATGCTGaaa  <  1:2370422/100‑1 (MQ=255)
                                                                                                 |                                                                                            
CACGTTCGCCACCAATCTTTTTCGGCCTAGATGTGGCAATAGTTACAATTGCCTGTCCTACTTGCTTTACTGAGGTCCTTACAGGTACACATACATGCTTAATATGCATGCCTATTAACGTTTGACCAATATCAATTCCACAAGGAACAGTAATATGTTCGACCACGATCGGATCCTTCATATGCTGAAA  >  NC_007793/2230671‑2230860

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑