| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,198,222 | G→A | T233T (ACG→ACA) | SAUSA300_RS11200 → | histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,198,222 | 0 | G | A | 100.0% | 45.2 / NA | 17 | T233T (ACG→ACA) | SAUSA300_RS11200 | histidine kinase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (4/13); total (4/13) | |||||||||||
GCCCACCTAAGCGAACTGCGTACATTGACGTTAAGAACAGTTGCCGACTTGATGAGTGATAAAGAAAAAGTCCGACACAACCATAAAACGTCACTCAAACCTCATATTGCTGTGGCAATTAGTGGGAGCATTTATAATGAAGCAGTAATTAAAGAGGCATTCCATATTGCTCAAAAAGAACATGCG > NC_007793/2198133‑2198318 | acccACCTAAGCGAACTGCGTACATTGACGTTAAGAACAGTTGCCGACTTGATGAGTGATAAAGAAAAAGTCCGACACAACCATAAAACATCACTCAAAc > 1:5423703/2‑100 (MQ=255) atcTGCGTACATTGACGTTAAGAACAGTTGCCGACTTGATGAGTGATAAAGAAAAAGTCCGACACAACCATAAAACATCACTCAAACCTCATATTGCtgt < 1:3157326/98‑1 (MQ=255) aaCTGCGTACATTGACGTTAAGAACAGTTGCCGACTTGATGAGTGATAAAGAAAAAGTCCGACACAACCATAAAACATCACTCAAACCTCATATTGCtgt < 1:4928947/100‑1 (MQ=255) tcTGCGTGCATTGACGTTAAGAACAGTTGCCGACTTGATGAGTGATAAAGAAAAAGTCCGACACAACCATAAAACATCACTCAAACCTCATATTGCtgtg < 1:675390/99‑1 (MQ=255) gCGTACATTGACGTTAAGAACAGTTGCCGACTTGATGAGTGATAAAGAAAAAGTCCGACACAACCATAAAACATCACTCAAACCTCATATTGCTGTGGCa > 1:164777/1‑100 (MQ=255) tGACGTTAAGAACAGTTGCCGACTTGATGAGTGATAAAGAAAAAGTCCGACACAACCATAAAACATCACTCAAACCTCATATTGCTGTGGCAATTAGTgg < 1:4127994/100‑1 (MQ=255) gACGTTAAGAACAGTTGCCGACTTGATGAGTGATAAAGAAAAAGTCCGACACAACCATAAAACATCACTCAAACCTCATATTGCTGTGGCAATTAGTggg < 1:2000080/100‑1 (MQ=255) cGTTAAGAACAGTTGCCGACTTGATGAGTGATAAAGAAAAAGTCCGACACAACCATAAAACATCACTCAAACCTCATATTGCTGTGGCAATTAGTGGGAg < 1:3077105/100‑1 (MQ=255) tgaGAACAGTTGCCGACTTGATGAGTGATAAAGAAAAAGTCCGACACAACCATAAAACATCACTCAAACCTCATATTGCTGTGGCAATTAGTggagcagg < 1:2656997/98‑7 (MQ=255) gTTGCCGACTTGATGAGTGATAAAGAAAAAGTCCGACACAACCATAAAACATCACTCAAACCTCATATTGCTGTGGCAATTAGTGGGAGCATTTATAATg > 1:1919030/1‑100 (MQ=255) cgatcTTGATGAGTGATAAAGAAAAAGTCCGACACAACCATAAAACATCACTCAAACCTCATATTGCTGTGGCAATTAGTGGGAGCATTTATAATGAAGc < 1:787924/96‑1 (MQ=255) ccGACTTGATGAGTGATAAAGAAAAAGTCCGACACAACCATAAAACATCACTCAAACCTCATATTGCTGTGGCAATTAGTGGGAGCATTTATAATGAAGc < 1:164643/100‑1 (MQ=255) aaaGTCCGACACAACCATAAAACATCACTCAAACCTCATATTGCTGTGGCAATTAGTGGGAGCATTTATAATGAAGCAGTAATTAAAGAGGCATTCCagg < 1:977236/100‑3 (MQ=255) aaGTCCGACACAACCATAAAACATCACTCAAACCTCATATTGCTGTGGCAATTAGTGGGAGCATTTATAATGAAGCAGTAATTAAAGAGGCATTCCaggg < 1:1471968/100‑4 (MQ=255) ccGACACAACCATAAAACATCACTCAAACCTCATATTGCTGTGGCAATTAGTGGGAGCATTTATAATGAAGCAGTAATTAAAGAGGCATTCCATATTGCt > 1:1161062/1‑100 (MQ=255) acacAACCATAAAACATCACTCAAACCTCATATTGCTGTGGCAATTAGTGGGAGCATTTATAATGAAGCAGTAATTAAAGAGGCATTCCATATTGCTCaa < 1:5450029/100‑1 (MQ=255) aaCATCACTCAAACCTCATATTGCTGTGGCAATTAGTGGGAGCATTTATAATGAAGCAGTAATTAAAGAGGCATTCCATATTGCTCAAAAAGAACATGCg < 1:5505381/100‑1 (MQ=255) | GCCCACCTAAGCGAACTGCGTACATTGACGTTAAGAACAGTTGCCGACTTGATGAGTGATAAAGAAAAAGTCCGACACAACCATAAAACGTCACTCAAACCTCATATTGCTGTGGCAATTAGTGGGAGCATTTATAATGAAGCAGTAATTAAAGAGGCATTCCATATTGCTCAAAAAGAACATGCG > NC_007793/2198133‑2198318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |