| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,127,669 | C→A | intergenic (+20/‑37) | SAUSA300_RS10835 → / → SAUSA300_RS10840 | integrase/phosphodiesterase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,127,669 | 0 | C | A | 100.0% | 31.4 / NA | 13 | intergenic (+20/‑37) | SAUSA300_RS10835/SAUSA300_RS10840 | integrase/phosphodiesterase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (12/1); total (12/1) | |||||||||||
GTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACA > NC_007793/2127575‑2127752 | gtgtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGAATCCaa > 1:2861964/1‑100 (MQ=255) tctcATTTGTTAGAAGAAAAATTTAATGAAGAGGAC‑AAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGAATCCAAACCCaat > 1:977307/1‑100 (MQ=255) ctcATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGAATCCAAACCCaat > 1:1308526/1‑100 (MQ=255) cATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGAATCCAAACCCaataa > 1:4095092/1‑100 (MQ=255) cATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGAATCCAAACCCaataa > 1:550352/1‑100 (MQ=255) cATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGAATCCAAACCCaataa > 1:552750/1‑100 (MQ=255) cagGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGAATCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTa > 1:2912525/2‑100 (MQ=255) agGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGAATCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTAt > 1:364828/1‑100 (MQ=255) agGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGAATCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTAt > 1:5470584/1‑100 (MQ=255) gctacaacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGAATCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTg > 1:3614069/4‑100 (MQ=255) acaacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGAATCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTgggg < 1:4203653/100‑1 (MQ=255) tATGTAATTTAGGGACCCATTAGGGAATCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACT‑GGGGCAATATAAACGCGCAGAtcg > 1:460727/1‑98 (MQ=255) caGGGACCCATTAGGGAATCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACT‑GGGGCAATATAAACGCGCTGATTTAATTGGACa > 1:3993357/2‑100 (MQ=255) | GTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACA > NC_007793/2127575‑2127752 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |