| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,126,944 | T→C | D111D (GAT→GAC) | SAUSA300_RS10835 → | integrase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,126,944 | 0 | T | C | 100.0% | 30.9 / NA | 13 | D111D (GAT→GAC) | SAUSA300_RS10835 | integrase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (10/3); total (10/3) | |||||||||||
GCATTACAACATATACAAAAACATAAAATAGGTAAAATGGAGTTATCAAAGATAAATAGACAAGTTTATCAGAAATTCATAAACGATTATTCAAAAGAACACGCAAAAGAAACTATAAGAAAAACAAACGGTGCTATTCGGTCAGCTTTAGATGACGCATTATATGATGGGCTTATTTTTA > NC_007793/2126858‑2127038 | gCATTACAACATATACAAAAACATAAAATAGGTAAAATGGAGTTATCAAAGATAAATAGACAAGTTTATCAGAAATTCATAAACGACTATTCAAAAGAac > 1:98789/1‑100 (MQ=255) gtACAACATATACAAAAACATAAAATAGGTAAAATGGAGTTATCAAAGATAAATAGACAAGTTTATCAGAAATTCATAAACGACTATTCAAAAGAACACg > 1:5053287/2‑100 (MQ=255) gacaacaTATACAAAAACATAAAATAGGTAAAATGGAGTTATCAAAGATAAATAGACAAGTTTATCAGAAATTCATAAACGACTATTCAAAAGAACACGc > 1:2991416/2‑100 (MQ=255) ataCAAAAACATAAAATAGGTAAAATGGAGTTATCAAAGATAAATAGACAAGTTTATCAGAAATTCATAAACGACTATTCAAAAGAACACGCAAAAGaaa > 1:5781643/1‑100 (MQ=255) aGATAAATAGACAAGTTTATCAGGAATTCATAAACGACTATTCAAAAGAACACGCAAAAGAAACTATAAGAAAAACAAACGGTGCTATTCGGTCAGCttt < 1:703119/100‑1 (MQ=255) aGATAAATAGACAAGTTTATCAGAAATTCATAAACGACTATTCAAAAGAACACGCAAAAGAAACTATAAGAAAAACAAACGGTGCTATTCGGTCAGCttt < 1:1010476/100‑1 (MQ=255) aGATAAATAGACAAGTTTATCAGAAATTCATAAACGACTATTCAAAAGAACACGCAAAAGAAACTATAAGAAAAACAAACGGTGCTATTCGGTCAGCttt < 1:2040736/100‑1 (MQ=255) aGACAAGTTTATCAGAAATTCATAAACGACTATTCAAAAGAACACGCAAAAGAAACTATAAGAAAAACAAACGGTGCTATTCGGTCAGCTTTAGATGACg > 1:3471434/1‑100 (MQ=255) cAGAAATTCATAAACGACTATTCAAAAGAACACGCAAAAGAAACTATAAGGAAACCAAACGGTGCTATTCGGTCAGCTTTAGATGACGCATTATatgatg > 1:866194/1‑100 (MQ=255) tCATAAACGACTATTCAAAAGAACACGCAAAAGAAACTATAAGAAAAACAAACGGTGCTATTCGGTCAGCTTTAGATGACGCATTATATGATGGACTTAt > 1:593916/1‑100 (MQ=255) tAAACGACTATTCAAAAGAACACGCAAAAGAAACTATAAGAAAAACAAACGGTGCTATTCGGTCAGCTTTAGATGACGCATTATATGATGGACTTAtttt > 1:2046429/1‑100 (MQ=255) aaaCGACTATTCAAAAGAACACGCAAAAGAAACTATAAGAAAAACAAACGGTGCTATTCGGTCAGCTTTAGATGACGCATTATATGATGGACTTAttttt > 1:4231890/1‑100 (MQ=255) aaCGACTATTCAAAAGAACACGCAAAAGAAACTATAAGAAAAACAAACGGTGCTATTCGGTCAGCTTTAGATGACGCATTATATGATGGACTTATTTTTa > 1:5004223/1‑100 (MQ=255) | GCATTACAACATATACAAAAACATAAAATAGGTAAAATGGAGTTATCAAAGATAAATAGACAAGTTTATCAGAAATTCATAAACGATTATTCAAAAGAACACGCAAAAGAAACTATAAGAAAAACAAACGGTGCTATTCGGTCAGCTTTAGATGACGCATTATATGATGGGCTTATTTTTA > NC_007793/2126858‑2127038 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |