| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 48,988 | T→C | intergenic (‑97/+137) | SAUSA300_RS00205 ← / ← SAUSA300_RS00210 | recombinase RecA/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 48,988 | 0 | T | C | 100.0% | 13.2 / NA | 7 | intergenic (‑97/+137) | SAUSA300_RS00205/SAUSA300_RS00210 | recombinase RecA/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (2/5); total (2/5) | |||||||||||
CATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTCTATCTTCAATACGTC > NC_007793/48889‑49082 | cATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATAGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCAttt < 1:2134484/100‑1 (MQ=255) tCACAGTGATAATATATATTTATAGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTCGTTTGATTGATttcttc > 1:1284511/1‑100 (MQ=255) aaTTGATATATAAGCCCAACATCAATGGGATGTTGGGCGACCATATTAGTCATTCGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATa < 1:5428054/100‑1 (MQ=255) aaTTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTCGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATa < 1:1847725/100‑1 (MQ=255) gagaTGTTGGGCGTCCATATTAGTCATTCGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCGCTCCGtt < 1:3002868/100‑1 (MQ=255) tGTTGGGCGTCCATATTAGTCATTCGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTAttt > 1:5432826/1‑100 (MQ=255) ggCGTCCATATTAGTCATTCGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTCt < 1:3746953/100‑1 (MQ=255) tCATTCGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTCTATCTTCAATACGTc < 1:2313115/100‑1 (MQ=255) | CATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTCTATCTTCAATACGTC > NC_007793/48889‑49082 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |