Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	2,102,599	T→A	V88V (GTA→GTT)	SAUSA300_RS10605 ←	phage tail protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	2,102,599	0	T	A	100.0%	33.1 / NA	13	V88V (GTA→GTT)	SAUSA300_RS10605	phage tail protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (0/13);  total (0/13)

CCAAATTGCTACATAGTTGTTTTGTTTACCTTGAGTTTCTTTATAAACACCGTATTCATCATACTCTTCATTGAATACTATTTTGCGAATCTCTTTAGGGAAAGCATGCATTTGTAACGAAATTTTACCTTCTCCGTCTGTGTTCCCTGATTCGATTGGACCACCATCA  >  NC_007793/2102524‑2102692                                                                            |                                                                                              ccatacagCTACGTAATTGTTTTGTTTACCTTGTTTCTCTTCGTAAACGCCATCTTCATCATAATCTTCATTAAAAACAATTTTGCGAATCTCTTTAggg                                                                       <  1:2070599/93‑1 (MQ=255)                                          cgtaAACGCCATCTTCATCATAATCTTCATTAAAAACAATTTTGCGAATCTCTTTAGGGAACGCATGCATTTGTAATGAGATTTTACCTTCTCCGTCtgt                              <  1:2996373/98‑1 (MQ=255)                                          cgtaAACGCCATCTTCATCATAATCTTCATTAAAAACAATTTTGCGAATCTCTTTAGGGAACGCATGCATTTGTAATGAGATTTTACCTTCTCCGTCtgt                              <  1:3866519/98‑1 (MQ=255)                                            taAACGCCATCTTCATCATAATCTTCATTAAAAACAATTTTGCGAATCTCTTTAGGGAACGCATGCATTTGTAATGAGATTTTACCTTCTCCGTCtgtat                            <  1:1247571/100‑3 (MQ=255)                                                  ccatcttCATCATAATCTTCATTAAAAACAATTTTGCGAATCTCTTTAGGGAACGCATGCATTTGTAATGAGATTTTACCTTCTCCGTCTGTATTCCCTg                      <  1:5138992/95‑1 (MQ=255)                                                  ccatcttCATCATAATCTTCATTAAAAACAATTTTGCGAATCTCTTTAGGGAACGCATGCATTTGTAATGAGATTTTACCTTCTCCGTCTGTATTCCCTg                      <  1:988841/95‑1 (MQ=255)                                                    atcttCATCATAATCTTCATTAAAAACAATTTTGCGAATCTCTTTAGTGAACGCTTGCATTTGTAATGAGATTTTACCTTCTCCGTCTGTATTCCCTGAt                    <  1:5592636/97‑1 (MQ=255)                                                    atcttCATCATAATCTTCATTAAAAACAATTTTGCGAATCTCTTTAGGGAACGCATGCATTTGTAATGAGATTTTACCTTCTCCGTCTGTATTCCCTGAt                    <  1:91555/97‑1 (MQ=255)                                                            catAATCTTCATTAAAAACAATTTTGCGAATCTCTTTAGGGAACGCATGCATTTGTAATGAGATTTTACCTTCTCCGTCTGTATTCCCTGATTCAATTgg            <  1:4745060/100‑1 (MQ=255)                                                            catAATCTTCATTAAAAACAATTTTGCGAATCTCTTTAGGGAACGCATGCATTTGTAATGAGATTTTACCTTCTCCGTCTGTATTCCCTGATTCAATTgg            <  1:787360/100‑1 (MQ=255)                                                                 tctTCATTAAAAACAATTTTGCGAATCTCTTTAGGGAACGCATGCATTTGTAATGAGATTTTACCTTCTCCGTCTGTATTCCCTGATTCAATTGGaccgg       <  1:2272334/100‑3 (MQ=255)                                                                     cATTAAAAACAATTTTGCGAATCTCTTTAGGGAACGCATGCATTTGTAATGAGATTTTACCTTCTCCGTCTGTATTCCCTGATTCAATTGGACCGCCATc   <  1:3268869/100‑1 (MQ=255)                                                                      aTTAAAAACAATTTTGCGAATCTCTTTAGGGAACGCATGCATTTGTAATGAGATTTTACCTTCTCCGTCTGTATTCCCTGATTCAATTGGaccgccgcgt  <  1:3212929/100‑5 (MQ=255)                                                                            |                                                                                              CCAAATTGCTACATAGTTGTTTTGTTTACCTTGAGTTTCTTTATAAACACCGTATTCATCATACTCTTCATTGAATACTATTTTGCGAATCTCTTTAGGGAAAGCATGCATTTGTAACGAAATTTTACCTTCTCCGTCTGTGTTCCCTGATTCGATTGGACCACCATCA  >  NC_007793/2102524‑2102692

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑