Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	2,102,048	A→T	intergenic (‑146/+170)	SAUSA300_RS10600 ← / ← SAUSA300_RS10605	hypothetical protein/phage tail protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	2,102,048	0	A	T	100.0%	11.5 / NA	6	intergenic (‑146/+170)	SAUSA300_RS10600/SAUSA300_RS10605	hypothetical protein/phage tail protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (1/5);  total (1/5)

TTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCTTCCGCAGTGACTTGACCATCACTATTGATTGATACAATATTCGTTTGATCTGTTGTGTATTTCAATAACTTACTTTGATTAGATGGCT  >  NC_007793/2101972‑2102115                                                                             |                                                                    gtataGTGTCACTCATATTACCAACTGTTGCTTTAACCGTAGCAATGCCTTGTGCTTCCGCAGTAACTTGACCATCTCTATTGATTGATACAATATTCGt                                              >  1:1753218/2‑100 (MQ=255)  tataGTGTCACTCATATTTCCAACTGTTGCTTTATCCGTAGCAATGCCTTGTGCTTCCGCAGTAACTTGACCATCTCTATTGATTGATACAATATTCGtt                                             <  1:2464092/100‑1 (MQ=255)                                     ccGTAGCAATGCCTTGTGCTTCCGCAGTAACTTGACCATCTCTATTGATTGATACAATATTCGTTTGATCTGTTGTGTATTTCAATAACTTACTTTGAtt          <  1:2684552/100‑1 (MQ=255)                                     ccGTAGCAATGCCTTGTGCTTCCGCAGTAACTTGACCATCTCTATTGATTGATACAATATTCGTTTGATCTGTTGTGTATTTCAATAACTTACTTTGAtt          <  1:4663447/100‑1 (MQ=255)                                            aaTGCCTTGTGCTTCCGGAGTAACTTGACCATCTCTATTGATTGATACAATATTCGTTTGATCTGTTGTGTATTTCAATAACTTACTTTGATTAGATggg   <  1:3422481/100‑2 (MQ=255)                                             atgccTTGTGCTTCCGCAGTAACTTGACCATCTCTATTGATTGATACAATATTCGTTTGATCTGTTGTGTATTTCAATAACTTACTTTGATTAgcgccat  <  1:3218319/97‑7 (MQ=255)                                                                             |                                                                    TTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCTTCCGCAGTGACTTGACCATCACTATTGATTGATACAATATTCGTTTGATCTGTTGTGTATTTCAATAACTTACTTTGATTAGATGGCT  >  NC_007793/2101972‑2102115

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑