Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	2,101,945	T→C	intergenic (‑43/+273)	SAUSA300_RS10600 ← / ← SAUSA300_RS10605	hypothetical protein/phage tail protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	2,101,945	0	T	C	100.0%	17.9 / NA	9	intergenic (‑43/+273)	SAUSA300_RS10600/SAUSA300_RS10605	hypothetical protein/phage tail protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (0/9);  total (0/9)

TCTTCTACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCTTCCGCAGTGACTT  >  NC_007793/2101862‑2102040                                                                                    |                                                                                                ttccgatctaATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGCCCCCTCTTATGCTTCt                                                                                 <  1:1536599/93‑1 (MQ=255)          aaTTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGCCCCCTCTTATGCTTCTACACTTAtt                                                                        <  1:5272990/100‑1 (MQ=255)                 taatGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGCCCCCTCTTATGCTTCTACATTTATTGTtatgg                                                                 <  1:1913951/100‑3 (MQ=255)                     gTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGCCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTc                                                             <  1:2754507/100‑1 (MQ=255)                                  tttGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGCCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTAcgc                                                <  1:5509257/100‑3 (MQ=255)                                      ccATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGCCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAActg                                            <  1:4534173/100‑3 (MQ=255)                                            tataATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGCCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAActgttgctt                                      <  1:1635745/100‑9 (MQ=255)                                            tataATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGCCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAActgttgcta                                      <  1:194327/100‑9 (MQ=255)                                                                                gTTGCCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACTGTTGCTTTAACCGTAGCAATGCCTTGTGCTTCCGCAGTAACtt  <  1:1534668/100‑1 (MQ=255)                                                                                    |                                                                                                TCTTCTACTAATTGAATAATGTTACGTTTTAATTTTGCCATTTTATAATACTCTCCTTATTTTCAAATAAAATAGAGGGGTTGTCCCCTCTTATGCTTCTACATTTATTGTTATAGTGTCACTCATATTACCAACATATGCTTTAACCGTGGCAATACCTTGTGCTTCCGCAGTGACTT  >  NC_007793/2101862‑2102040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑