| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,101,095 | G→A | N71N (AAC→AAT) | SAUSA300_RS10590 ← | phage tail tape measure protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,101,095 | 0 | G | A | 85.7% | 12.1 / ‑5.3 | 7 | N71N (AAC→AAT) | SAUSA300_RS10590 | phage tail tape measure protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (1/5); minor base T (1/0); total (2/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCTTGTCGTAACTTTTGAGCTCCTGCACTGTTTTCGCCCTGTTCTTGAGATACCTTGTCATATTGCTTAGCTAAATCATCAACGTTTTTCTTATAACCTGTGATAGTTCCATCAAGTTCTTTAATCCTTTGTTTGTAACTATCAGTTGATTTTTCGGTATATTTGAAGTTGTTGCCTGTT > NC_007793/2101012‑2101191 | tCTTGCCGTAATTTTTGAGCTTCTGCACTGTTTTCACCCTGTTCTTGAGATACCTTGTCATATTGCTTGGCTAAATCATCAACATTTTTCTTATAACCta < 1:402736/100‑2 (MQ=255) gccGTAATTTTTGAGCTTCTGCACTGTTTTCACCCTGTTCTTGAGATACCTTGTCATATTGCTTGGCTAAATCATCAACATTTTTCTTATAACCTATGAt > 1:3468290/3‑100 (MQ=255) gccGTAATTTTTGAGCTTCTGCACTGTTTTCACCCTGTTCTTGAGATACCTTGTCATATTGCTTGGCTAAATCATCAACATTTTTCTTATAACCTATGAt < 1:441957/98‑1 (MQ=255) cTGCACTGTTTTCACCCTGTTCTTGAGATACCTTGTCATATTGCTTGGCTAAATCATCAACTTTTTTCTTATAACCTATGATAGTTCCGTCAAGTTCttt > 1:2211669/1‑100 (MQ=255) cccTGTTCTTGAGATACCTTGTCATATTGCTTGGCTAAATCATCAACATTTTTCTTATAACCTATGATAGTTCCGTCAAGTTCTTTAATCCTttgttggt < 1:3981476/100‑1 (MQ=255) catcaACATTTTTCTTATAACCTATGATAGTTCCGTCAAGTTCTTTAATCCTTTGTTGGTAACTATCAGTTGATTTTTCGGTATATTTGAAGTTGTTGcc < 1:4833247/100‑1 (MQ=255) aaCATTTTTCTTATAACCTATGATAGTTCCGTCAAGTTCTTTAATCCTTTGTTGGTAACTATCAGTTGATTTTTCGGTATATTTGAAGTTGTTGCCGGtt < 1:5470751/100‑1 (MQ=255) | TCTTGTCGTAACTTTTGAGCTCCTGCACTGTTTTCGCCCTGTTCTTGAGATACCTTGTCATATTGCTTAGCTAAATCATCAACGTTTTTCTTATAACCTGTGATAGTTCCATCAAGTTCTTTAATCCTTTGTTTGTAACTATCAGTTGATTTTTCGGTATATTTGAAGTTGTTGCCTGTT > NC_007793/2101012‑2101191 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |