| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,100,966 | T→C | L114L (TTA→TTG) | SAUSA300_RS10590 ← | phage tail tape measure protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,100,966 | 0 | T | C | 90.0% | 16.5 / ‑3.9 | 10 | L114L (TTA→TTG) | SAUSA300_RS10590 | phage tail tape measure protein |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (3/6); total (4/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.15e-01 | |||||||||||
ACTGGTTTTTCCCCAGCCACTTTCTGCCATTCTTTGAGCTTCAACTTGAGCTTTTTTGAACTCTTCAAATTCGGCTGATGTTTTTTGTAATTCTCTTTCTAAATAATTCAGTTCATTTGCTTGTTTGTTATATTCTTGTCGTAACTTTTGAGCTCCTGCACTGTTTTCGCCCTGTTCTTGA > NC_007793/2100879‑2101059 | aCTGGTTTTCCCCCAGCCACTTTCTGCCATTCTTTGAGCTTCAACTTGGGCTTTTTTGAACTCTTCAAACTCAGCCGATGTTTTTTGTAATTCTCTTTCt > 1:5381091/1‑100 (MQ=255) tCCCCAGCCACTTTCTGCCATTCTTTGAGCTTCAACTTGGGCTTTTTTGAACTCTTCAAACTCAGCCGATGTTTTTTGCAATTCTCTTTCTAAATAATTc > 1:1420593/1‑100 (MQ=255) tcAGCCACTTTCTGCCATTCTTTGAGCTTCAACTTGGGCTTTTTTGAACTCTTCAAACTCAGCCGATGTTTTTTGCAATTCTCTTTCTAAATAATTCAgc > 1:4003543/2‑99 (MQ=255) ccAGCCACTTTCTGCCATTCTTTGAGCTTCAACTTGGGCTTTTTTGAACTCTTCAAACTCAGCCGATGTTTTTTGCAATTCTCTTTCTAAATAATTCAgc < 1:4964234/100‑2 (MQ=255) ccACTTTCTGCCATTCTTTGAGCTTCAACTTGGGCTTTTTTGAACTCTTCAAACTCAGCCGATGTTTTTTGCAATTCTCTTTCTAAATAATTCAGCTCag < 1:2933117/100‑2 (MQ=255) cATTCTTTGAGCTTCAACTTGGGCTTTTTTGAACTCTTCAAACTCAGCCGATGTTTTTTGCAATTCTCTTTCTAAATAATTCAGCTCATTTGCttgtttg > 1:5436442/1‑100 (MQ=255) cgATGTTTTTTGCAATTCTCTTTCTAAATAATTCAGCTCATTTGCTTGTTTGTTATATTCTTGCCGTAATTTTTGAGCTTCCGCACTGTTTTCAcccgcg < 1:3886189/99‑4 (MQ=255) ttttttGCAATTCTCTTTCTAAATAATTCAGCTCATTTGCTTGTTTGTTATATTCTTGCCGTAATTTTTGAGCTTCTGCACTGTTTTCACCCTGTTCTTg < 1:1582376/100‑1 (MQ=255) ttttttGCAATTCTCTTTCTAAATAATTCAGCTCATTTGCTTGTTTGTTATATTCTTGCCGTAATTTTTGAGCTTCTGCACTGTTTTCACCCTGTTCTTg < 1:547994/100‑1 (MQ=255) tttttGCAATTCTCTTTCTAAATAATTCAGCTCATTTGCTTGTTTGTTATATTCTTGCCGTAATTTTTGAGCTTCTGCACTGTTTTCACCCTGTTCTTgg < 1:3229010/100‑2 (MQ=255) | ACTGGTTTTTCCCCAGCCACTTTCTGCCATTCTTTGAGCTTCAACTTGAGCTTTTTTGAACTCTTCAAATTCGGCTGATGTTTTTTGTAATTCTCTTTCTAAATAATTCAGTTCATTTGCTTGTTTGTTATATTCTTGTCGTAACTTTTGAGCTCCTGCACTGTTTTCGCCCTGTTCTTGA > NC_007793/2100879‑2101059 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |