Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	2,098,446	C→T	T954T (ACG→ACA)	SAUSA300_RS10590 ←	phage tail tape measure protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	2,098,446	0	C	T	100.0%	11.2 / NA	6	T954T (ACG→ACA)	SAUSA300_RS10590	phage tail tape measure protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (1/5);  total (1/5)

GTATTAGGTGTGATTACACGTTTACCATTAGGGAATTCAATTATTTCATTTCTGAAACCATTCGGACCATTTCCACGTCCTTTATCCCCAACCGTAGCGAACGTATCCCGCGCAATCTTACCGTTCTTAACTAATCTTGTAGTAGTATGTGTGTGTTCTGTACCAGTGTGT  >  NC_007793/2098354‑2098524                                                                                             |                                                                               gTATTTGGTGTGATTACACGTTTACCATTAGGGAATTCAATCATTTCGTTTCTAAAACCATTTGGACCATTTCCGCGTCCCTTATCTCCAACTGTAGCGa                                                                         <  1:1920589/100‑1 (MQ=255)               tACACGTTTACCATTAGGGAATTCAATCATTTCGTTTCTAAAACCATTTGGACCATTTCCGCGTCCCTTATCTCCAACTGTAGCGAATGTGTCACGTGCa                                                           >  1:5258549/1‑100 (MQ=255)                                         tcatttcgtttcTAAAACCATTTGGACCATTTCCGCGTCCCTTATCTCCAACTGTAGCGAATGTGTCACGTGCAATCTTACCGTTCTTAACTAATCTTgt                                 <  1:3739005/98‑1 (MQ=255)                                         ctattTCATTTCTAAAACCATTTGGACCATTTCCACGTCCTTTATCCCCAACTGTAGCGAATGTATCACGTGCAATCTTACCGTTCTTAACTAATCTTgt                                 <  1:1390494/99‑1 (MQ=255)                                                                 ccgatcttCCGCGTCCCTTATCTCCAACTGTAACGAATGTGTCACGTGCAATCTTACCGTTCTTAACTAATCTTGTAGTAGTATGTGTGTGCTCTGTAcc         <  1:2438123/94‑1 (MQ=255)                                                                        tCCGCGTCCCTTATCTCCAACTGTAGCGAATGTGTCACGTGCAATCTTACCGTTCTTAACTAATCTTGTAGTAGTATGTGTGTGCTCTGTACCAgtatgt  <  1:1354825/100‑1 (MQ=255)                                                                                             |                                                                               GTATTAGGTGTGATTACACGTTTACCATTAGGGAATTCAATTATTTCATTTCTGAAACCATTCGGACCATTTCCACGTCCTTTATCCCCAACCGTAGCGAACGTATCCCGCGCAATCTTACCGTTCTTAACTAATCTTGTAGTAGTATGTGTGTGTTCTGTACCAGTGTGT  >  NC_007793/2098354‑2098524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑