Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	2,098,416	C→T	P964P (CCG→CCA)	SAUSA300_RS10590 ←	phage tail tape measure protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	2,098,416	0	C	T	100.0%	11.0 / NA	6	P964P (CCG→CCA)	SAUSA300_RS10590	phage tail tape measure protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (2/4);  total (2/4)

AGCCTTTAGGTAAATAAGCGGTAGTATCTGTATTAGGTGTGATTACACGTTTACCATTAGGGAATTCAATTATTTCATTTCTGAAACCATTCGGACCATTTCCACGTCCTTTATCCCCAACCGTAGCGAACGTATCCCGCGCAATCTTACCGTTCTTAACTAATCTTGT  >  NC_007793/2098325‑2098493                                                                                            |                                                                              aGCCTTTAGGTAAATAAGCAGTAGTATCTGTCTTTGGTGTGATTACACGATTACCATTAGGGAATTCAATAATTTCGTTTCTAAAACCATATGGACCAtt                                                                       >  1:4349343/1‑100 (MQ=255) aGCCTTTAGGTAAATAAGCAGTAGTATCTGTATTTGGTGTGATTACACGTTTACCATTAGGGAATTCAATCATTTCGTTTCTAAAACCATTTGGACCAtt                                                                       <  1:1214534/100‑1 (MQ=255)                              gTATTTGGTGTGATTACACGTTTACCATTAGGGAATTCAATCATTTCGTTTCTAAAACCATTTGGACCATTTCCGCGTCCCTTATCTCCAACTGTAGCGa                                          <  1:1920589/100‑1 (MQ=255)                                            tACACGTTTACCATTAGGGAATTCAATCATTTCGTTTCTAAAACCATTTGGACCATTTCCGCGTCCCTTATCTCCAACTGTAGCGAATGTGTCACGTGCa                            >  1:5258549/1‑100 (MQ=255)                                                                      tcatttcgtttcTAAAACCATTTGGACCATTTCCGCGTCCCTTATCTCCAACTGTAGCGAATGTGTCACGTGCAATCTTACCGTTCTTAACTAATCTTgt  <  1:3739005/98‑1 (MQ=255)                                                                      ctattTCATTTCTAAAACCATTTGGACCATTTCCACGTCCTTTATCCCCAACTGTAGCGAATGTATCACGTGCAATCTTACCGTTCTTAACTAATCTTgt  <  1:1390494/99‑1 (MQ=255)                                                                                            |                                                                              AGCCTTTAGGTAAATAAGCGGTAGTATCTGTATTAGGTGTGATTACACGTTTACCATTAGGGAATTCAATTATTTCATTTCTGAAACCATTCGGACCATTTCCACGTCCTTTATCCCCAACCGTAGCGAACGTATCCCGCGCAATCTTACCGTTCTTAACTAATCTTGT  >  NC_007793/2098325‑2098493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑