Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_007793 2,097,234 G→T R1358R (CGC→CGA)  SAUSA300_RS10590 ← phage tail tape measure protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077932,097,2340GT87.5% 12.9 / ‑5.3 8R1358R (CGC→CGA) SAUSA300_RS10590phage tail tape measure protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base T (1/6);  minor base C (0/1);  total (1/7)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GGATGACCGTCTTCACCTAAGTTATACCAACCATCAAAAACTTTTCCACCTGTAGCATATGCGTAATCACCAGCACGCTTAAATCCATCCCAACCGTAGCGTCTAACAATGTACTGCATTGCTGAAATACCTTGATGAACCGGATTATTAAAGTTAGTATATCCACGTTTAGCGTT  >  NC_007793/2097136‑2097311
                                                                                                  |                                                                             
ggATGACCGTCTTCACCTAAGTTATACCAACCATCAAAAACTTTTCCACCTGTAGCATATGCGTAATCACCAGCACGTTTAAAACCACCCCAACCATAga                                                                              <  1:2725213/100‑2 (MQ=255)
            cgatcTAAGTTATACCAACCATCAAAAACTTTTCCACCTGTAGCATATGCGTAATCACCAGCACGTTTAAAACCACCCCAACCATATCGTCTAACAATGt                                                                  <  1:4183968/96‑1 (MQ=255)
                 tAAGTTATACCAACCATCAAAAACTTTTCCACCTGTAGCATATGCGTAATCACCAGCACGTTTAAAACCACCCCAACCATATCGTCTAACAATGTACTGc                                                             <  1:5338847/100‑1 (MQ=255)
                                           ttCCACCTGTAGCATATGCGTAATCACCAGCACGTTTAAAACCACCCCATCCATATCGTCTAACAATGTACTGCATTGCTGAGATACCTTGATGTACTgg                                   <  1:5615444/100‑1 (MQ=255)
                                           ctCCACCTGTAGCATATGCTTAATCACCAGCACGTTTAAAACCACCCCAACCATATCGTCTAACAATGTACTGCATTGCTGAGATACCTTGATGTACTgg                                   >  1:5172302/2‑100 (MQ=255)
                                             cgatcTGTAGCATATGCGTAATCACCAGCACGTTTAAAACCACCCCAACCATATCGTCTAACAATGTACTGCATTGCTGAGATACCTTGATGTACTGGat                                 <  1:2842782/96‑1 (MQ=255)
                                                            gCGTAATCACCAGCACGTTTAAAACCAACCCAACCATACCGTCTAACAATGTACTGCATTGCTGAGATACCTTGATGTACTGGATTATTATAATTAGtgt                  <  1:50486/100‑3 (MQ=255)
                                                              gTAATCACCAGCACGTTTAAA‑CCACCCCAACCATATCGTCTAACAATGTACTGCATTGCTGAGATACCTTGATGTACTGGATTATTATAATTAGtgtacc               <  1:1148183/100‑3 (MQ=255)
                                                                            gtttAAAACCACCCCAACCATATCGTCTAACAATGTACTGCATTGCTGAGATACCTTGATGTACTGGATTATTATAATTAGTGTACCCTCGTTTAGCGtt  <  1:4971068/98‑1 (MQ=255)
                                                                                                  |                                                                             
GGATGACCGTCTTCACCTAAGTTATACCAACCATCAAAAACTTTTCCACCTGTAGCATATGCGTAATCACCAGCACGCTTAAATCCATCCCAACCGTAGCGTCTAACAATGTACTGCATTGCTGAAATACCTTGATGAACCGGATTATTAAAGTTAGTATATCCACGTTTAGCGTT  >  NC_007793/2097136‑2097311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑