| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,097,223 | T→C | D1362G (GAT→GGT) | SAUSA300_RS10590 ← | phage tail tape measure protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,097,223 | 0 | T | C | 90.0% | 16.9 / ‑3.6 | 10 | D1362G (GAT→GGT) | SAUSA300_RS10590 | phage tail tape measure protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (1/8); minor base A (0/1); total (1/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.19e-01 | |||||||||||
AATCCATTCTGGATGACCGTCTTCACCTAAGTTATACCAACCATCAAAAACTTTTCCACCTGTAGCATATGCGTAATCACCAGCACGCTTAAATCCATCCCAACCGTAGCGTCTAACAATGTACTGCATTGCTGAAATACCTTGATGAACCGGATTATTAAAGTTAGTATATCCACGTTTAGCGTT > NC_007793/2097126‑2097311 | aatCCATTCTGGATGACCGTCTTCACCTAAGTTATACCAACCATCAAAAACTTTTCCACCTGTAGCATATGCGTAATCACCAGCACGTTTAAaaccaccc < 1:2406286/100‑1 (MQ=255) cTGGATGACCGTCTTCACCTAAGTTATACCAACCATCAAAAACTTTTCCACCTGTAGCATATGCGTAATCACCAGCACGTTTAAAACCACCCCAAccacg < 1:2155289/100‑4 (MQ=255) ggATGACCGTCTTCACCTAAGTTATACCAACCATCAAAAACTTTTCCACCTGTAGCATATGCGTAATCACCAGCACGTTTAAAACCACCCCAACCATAga < 1:2725213/100‑2 (MQ=255) tGACCGTCTTCACCTAAGTTATACCAACCATCAAAAACTTTTCCACCTGTAGCATATGCGTAATCACCAGAACGTTTAAAACcaccccacccagatcgga > 1:5171210/1‑92 (MQ=255) cgatcTAAGTTATACCAACCATCAAAAACTTTTCCACCTGTAGCATATGCGTAATCACCAGCACGTTTAAAACCACCCCAACCATATCGTCTAACAATGt < 1:4183968/96‑1 (MQ=255) tAAGTTATACCAACCATCAAAAACTTTTCCACCTGTAGCATATGCGTAATCACCAGCACGTTTAAAACCACCCCAACCATATCGTCTAACAATGTACTGc < 1:5338847/100‑1 (MQ=255) ttCCACCTGTAGCATATGCGTAATCACCAGCACGTTTAAAACCACCCCATCCATATCGTCTAACAATGTACTGCATTGCTGAGATACCTTGATGTACTgg < 1:5615444/100‑1 (MQ=255) ctCCACCTGTAGCATATGCTTAATCACCAGCACGTTTAAAACCACCCCAACCATATCGTCTAACAATGTACTGCATTGCTGAGATACCTTGATGTACTgg > 1:5172302/2‑100 (MQ=255) cgatcTGTAGCATATGCGTAATCACCAGCACGTTTAAAACCACCCCAACCATATCGTCTAACAATGTACTGCATTGCTGAGATACCTTGATGTACTGGat < 1:2842782/96‑1 (MQ=255) gCGTAATCACCAGCACGTTTAAAACCAACCCAACCATACCGTCTAACAATGTACTGCATTGCTGAGATACCTTGATGTACTGGATTATTATAATTAGtgt < 1:50486/100‑3 (MQ=255) gTAATCACCAGCACGTTTAAA‑CCACCCCAACCATATCGTCTAACAATGTACTGCATTGCTGAGATACCTTGATGTACTGGATTATTATAATTAGtgtacc < 1:1148183/100‑3 (MQ=255) gtttAAAACCACCCCAACCATATCGTCTAACAATGTACTGCATTGCTGAGATACCTTGATGTACTGGATTATTATAATTAGTGTACCCTCGTTTAGCGtt < 1:4971068/98‑1 (MQ=255) | AATCCATTCTGGATGACCGTCTTCACCTAAGTTATACCAACCATCAAAAACTTTTCCACCTGTAGCATATGCGTAATCACCAGCACGCTTAAATCCATCCCAACCGTAGCGTCTAACAATGTACTGCATTGCTGAAATACCTTGATGAACCGGATTATTAAAGTTAGTATATCCACGTTTAGCGTT > NC_007793/2097126‑2097311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |