Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	2,096,991	T→A	P1439P (CCA→CCT)	SAUSA300_RS10590 ←	phage tail tape measure protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	2,096,991	0	T	A	100.0%	14.3 / NA	7	P1439P (CCA→CCT)	SAUSA300_RS10590	phage tail tape measure protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (3/4);  total (3/4)

TTTATCTGCAATCACATCGTTGGATTGCGCTATTTTCAGTAATAAAGCTATTTGTTGTTGCTGTTGTTCAATCATTTTCAATAATAAGCTTGGGTCATCAAACCCATTTACACTAGACAATTGACTAGGACGCTTATTTTTACTCGCTTTTCTCCCTCTTACTTCTGCTGCTGCATAATGCAAC  >  NC_007793/2096901‑2097084                                                                                           |                                                                                              ccgaTCTGC‑ATCACATCGTTAGATTGTGCTATTTTCAGTAATAAAGCTATTTGTTGTTGCTGTTGTTCAATCATTTTCAATAATAAGCTAGGATCATCaa                                                                                     <  1:1165197/97‑1 (MQ=255)      cTGCAATCACATCGTTAGATTGTGCTATTTTCAGTAATAAAGCTATTTGTTGTTGCTGTTGTTCAATCATTTTCAATAATAAGCTAGGATCATCAAAccc                                                                                 >  1:803012/1‑100 (MQ=255)                 tCGTTAGATTGTGCTATTTTCAGTAATAAAGCTATTTGTTGTTGCTGTTGTTCAATCATTTTCAATAATAAGCTAGGATCATCAAACCCGTTTaagtctg                                                                      <  1:3231261/100‑7 (MQ=255)                                     cAGTAATAAAGCTATTTGTTGTTGCTGTTGTTCAATCATTTTCAATAATAAGCTAGGATCATCAAACCCGTTTAAGTCTGATAATTGGCTAGGACGCTTa                                                  >  1:2760919/1‑100 (MQ=255)                                                       ttgttgCTGTTGTTCAATCATTTTCAATAATAAGGTAGGATCATCAAACCCGTTTAAGTCTGATAATTGGCTAGGACGCTTATTTTTACTCGCTTTtttc                                <  1:5289182/100‑1 (MQ=255)                                                                         cATTTTCAATAATAAGCTAGGATCATCAAACCCGTTTAAGTCTGATAATTGGCTAGGACGCTTATTTTTACTCGCTTTTTTCCCTCTTACTTctgctgtt              <  1:4720029/100‑3 (MQ=255)                                                                                     ccaGCTAGGATCATCAAACCCGTTTAAGTCTGATAATTGGCTAGGACGCTTATTTTTACTCGCTTTTTTCCCTCTTACTTCTGCTGCTGCATAATGCaaa  >  1:4926325/3‑99 (MQ=255)                                                                                           |                                                                                              TTTATCTGCAATCACATCGTTGGATTGCGCTATTTTCAGTAATAAAGCTATTTGTTGTTGCTGTTGTTCAATCATTTTCAATAATAAGCTTGGGTCATCAAACCCATTTACACTAGACAATTGACTAGGACGCTTATTTTTACTCGCTTTTCTCCCTCTTACTTCTGCTGCTGCATAATGCAAC  >  NC_007793/2096901‑2097084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑