Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	2,096,922	G→A	S1462S (TCC→TCT)	SAUSA300_RS10590 ←	phage tail tape measure protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	2,096,922	0	G	A	100.0%	21.0 / NA	9	S1462S (TCC→TCT)	SAUSA300_RS10590	phage tail tape measure protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (2/7);  total (2/7)

CGCTTTTCTATAGACGCGTTCACCTTTTTATCAAAAGCGTATTCGTCAATAATCGGCTGATAATCTTTATCTGCAATCACATCGTTGGATTGCGCTATTTTCAGTAATAAAGCTATTTGTTGTTGCTGTTGTTCAATCATTTTCAATAATAAGCTTGGGTCATCAAACCCATTTACACTAG  >  NC_007793/2096836‑2097016                                                                                       |                                                                                               cGCTTTTCTATAGACGCGTTCACCTTTTTATCAAAAGCGTATTCGTCAATAATCGGCTGATAATCTTTATCTGCAATCACATCGTTAGATTGTGCTAttt                                                                                   >  1:4445948/1‑100 (MQ=255)      ttCTATAGACGCGTTCACCTTTTTATCAAAAGCGTATTCGTCAATAATCGGCTGATAATCTTTATCTGCAATCACATCGTTAGATTGTGCTATTTTCAGt                                                                              <  1:2018699/100‑1 (MQ=255)                                  aaaGCGTATTCGTCAATAATCGGCTGATAATCTTTATCTGCAATCACATCGTTAGATTGTGCTATTTTCAGTAATAAAGCTATTTGTTGTTGCtgttgta                                                  <  1:2489387/100‑2 (MQ=255)                                                        gCTGATAATCTTTATCTGCAATCACATCGTTAGATTGTGCTATTTTCAGTAATAAAGCTATTTGTTGTTGCTGTTGTTCAATCATTTTCAATAATAAGCt                            <  1:4708360/100‑1 (MQ=255)                                                         cTGATAATCTTTATCTGCAATCACATCGTTAGATTGTGCTATTTTCAGTAATAAAGCTATTTGTTGTTGCTGTTGTTCAATCATTTTCAATAATAAGCta                           <  1:280886/100‑2 (MQ=255)                                                         cTGATAATCTTTATCTGCAATCACATCGTTAGATTGTGCTATTTTCAGTAATAAAGCTATTTGTTGTTGCTGTTGTTCAATCATTTTCAATAATAAGCta                           <  1:949960/100‑2 (MQ=255)                                                                  ccgaTCTGC‑ATCACATCGTTAGATTGTGCTATTTTCAGTAATAAAGCTATTTGTTGTTGCTGTTGTTCAATCATTTTCAATAATAAGCTAGGATCATCaa                 <  1:1165197/97‑1 (MQ=255)                                                                       cTGCAATCACATCGTTAGATTGTGCTATTTTCAGTAATAAAGCTATTTGTTGTTGCTGTTGTTCAATCATTTTCAATAATAAGCTAGGATCATCAAAccc             >  1:803012/1‑100 (MQ=255)                                                                                  tCGTTAGATTGTGCTATTTTCAGTAATAAAGCTATTTGTTGTTGCTGTTGTTCAATCATTTTCAATAATAAGCTAGGATCATCAAACCCGTTTaagtctg  <  1:3231261/100‑7 (MQ=255)                                                                                       |                                                                                               CGCTTTTCTATAGACGCGTTCACCTTTTTATCAAAAGCGTATTCGTCAATAATCGGCTGATAATCTTTATCTGCAATCACATCGTTGGATTGCGCTATTTTCAGTAATAAAGCTATTTGTTGTTGCTGTTGTTCAATCATTTTCAATAATAAGCTTGGGTCATCAAACCCATTTACACTAG  >  NC_007793/2096836‑2097016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑