Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	2,096,104	T→C	K226K (AAA→AAG)	SAUSA300_RS10585 ←	phage tail protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	2,096,104	0	T	C	100.0%	19.5 / NA	9	K226K (AAA→AAG)	SAUSA300_RS10585	phage tail protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (4/5);  total (4/5)

GTTTCGTGCCAGCACCAACCCAACCTTTTGCATCAGAAAAATTAGTTGCTTTATATCCTTCGCCAAGATTGGATATCACAAAGTCACCGCCGACTTTACCACCTAAATCATTACTTGGAATATCTTCAGTAATCATCTTAGTCCAACCTTTGAAATCACGAAACTCACTATGATAAAC  >  NC_007793/2096010‑2096187                                                                                               |                                                                                    gTTTCGTGCCAGCACCAACCCAACCTTTTGCATCAGGAAAATTAGTTGCTTTATATCCTTCGCCAAGATTGGATATCACAAAGTCACCGCCGACCTTacc                                                                                <  1:4052772/100‑1 (MQ=255)     cGTGCCAGCACCAACCCAACCTTTTGCATCAGGAAAATTAGTTGCTTTATATCCTTCGCCAAGATTGGATATCACAAAGTCACCGCCGACCTTaccacag                                                                            <  1:2390512/100‑3 (MQ=255)     cGTGCCAGCACCAACCCAACCTTTTGCATCAGGAAAATTAGTTGCTTTATATCCTTCGCCAAGATTGGATATCACAAAGTCACCGCCGACCTTACCACCt                                                                            <  1:1196222/100‑1 (MQ=255)       tGCCAGCACCAACCCAACCTTTTGCATCAGGAAAATTAGTTGCTTTATATCCCTCGCCAAGATTGGATATCACAAAGTCACCGCCGACCTTACCACCTaa                                                                          >  1:2763590/1‑100 (MQ=255)          cAGCACCAACCCAACCTTTTGCATCAGGAAAATTAGTTGCTTTATATCCTTCGCCAAGATTGGATATCACAAAGTCACCGCCGACCTTACCACCTAAGTc                                                                       >  1:4181308/1‑100 (MQ=255)                   cccaaccTTTTGCATCAGGAAAATTAGTTGCTTTATATCCTTCGCCAAGATTGGATATCACAAAGTCACCGCCGACCTTACCACCTAAGTCATTACTTgg                                                              <  1:3950930/100‑1 (MQ=255)                                            aGTTGCTTTATATCCTTCGCCAAGATTGGATATCACAAAGTCACCGCCGACCTTACCACCTAAGTCATTACTTGGAATATCTTCAGTAATCATCTTAGTc                                     >  1:5523054/1‑100 (MQ=255)                                                   ttATATCCTTCGCCAAGATTGGATATCACAAAGTCACCGCCGACCTTACCACCTAAGTCATTACTTGGAATATCTTCAGTAATCATCTTAGTCCAACCtt                              >  1:1935240/1‑100 (MQ=255)                                                                               caAAGTCACCGCCGACCTTACCACCTAAGTCATTACTTGGAATATCTTCAGTAATCATCTTAGTCCAACCTTTGAAATCACGAAACTCACTATGGTAAAc  <  1:252163/100‑1 (MQ=255)                                                                                               |                                                                                    GTTTCGTGCCAGCACCAACCCAACCTTTTGCATCAGAAAAATTAGTTGCTTTATATCCTTCGCCAAGATTGGATATCACAAAGTCACCGCCGACTTTACCACCTAAATCATTACTTGGAATATCTTCAGTAATCATCTTAGTCCAACCTTTGAAATCACGAAACTCACTATGATAAAC  >  NC_007793/2096010‑2096187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑