| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,027,116 | C→T | G45E (GGA→GAA) | SAUSA300_RS10190 ← | two‑component sensor histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,027,116 | 0 | C | T | 97.8% | 125.8 / NA | 46 | G45E (GGA→GAA) | SAUSA300_RS10190 | two‑component sensor histidine kinase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (0/45); minor base G (0/1); total (0/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTTGCTGATTGATTTTGTAAGCGAGTACCGAACCAACAATAATACACAATAATATGATGATGAGATTTAAAAAT‑AAAAAAACTGGTATTCCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCTAGCATGCTATATACTA > NC_007793/2027027‑2027209 | tttGCTGATTGATTTTGTAAGCGAGTACCGAACCAACAATAATACACAATAATATGATGATGAGATTTAAAAAT‑AAAAAAACTGGTATTTCGAATATTtg < 1:2105270/100‑1 (MQ=255) tGCTGATTGATTTTGTAAGCGAGTACCGAACCAACAATAATACACAATAATATGATGATGAGATTTAAAAAT‑AAAAAAACTGGTATTTCGAATATTtgtg < 1:4158237/100‑1 (MQ=255) tAAGCGAGTACCGAACCAACAATAATACACAATAATATGATGATGAGATTTAAAAAT‑AAAAAAACTGGTATTTCGAATATTTGTGTATAAAACATACCtt < 1:3725061/100‑1 (MQ=255) aaGCGAGTACCGAACCAACAATAATACACAATAATATGATGATGAGATTTAAAAAT‑AAAAAAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTg < 1:3204472/100‑1 (MQ=255) aaGCGAGTACCGAACCAACAATAATACACAATAATATGATGATGAGATTTAAAAAT‑AAAAAAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTg < 1:2626910/100‑1 (MQ=255) aGCGAGTACCGAACCAACAATAATACACAATAATATGATGATGAGATTTAAAAAT‑AAAAAAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTgg < 1:5048649/100‑2 (MQ=255) aGTACCGAACCAACAATAATACACAATAATATGATGATGAGATTTAAAAAT‑AAAAAAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAAt < 1:992069/100‑1 (MQ=255) aGTACCGAACCAACAATAATACACAATAATATGATGATGAGATTTAAAAAT‑AAAAAAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAAt < 1:4829428/100‑1 (MQ=255) aGTACCGAACCAACAATAATACACAATAATATGATGATGAGATTTAAAAAT‑AAAAAAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAAt < 1:3376565/100‑1 (MQ=255) aGTACCGAACCAACAATAATACACAATAATATGATGATGAGATTTAAAAAT‑AAAAAAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAAt < 1:1610956/100‑1 (MQ=255) aGTACCGAACCAACAATAATACACAATAATATGATGATGAGATTTAAAAAT‑AAAAAAACTGGTATCTCGAATATTTGTGTATAAAACATACCTTGAAAAt < 1:1205629/100‑1 (MQ=255) cGAACCAACAATAATACACAATAATATGATGATGAGATTTAAAAAT‑AAAAAAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAgatg < 1:2323059/100‑1 (MQ=255) aaCCAACAATAATAAACAAAAATATGATGATGAGATTTAAAAAT‑AAAAAAACTGGTATTGCGAATATTTGTGTATAAAACATACCTTGAAAATAgatgat < 1:2890728/100‑1 (MQ=255) caacaaTAATACACAATAATATGATGATGAGATTTAAAAAT‑AAAAAAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATAtt < 1:2462335/100‑1 (MQ=255) gatgatgaGATTTAAAAAT‑AAAAAAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAAc < 1:2811829/100‑1 (MQ=255) gatgaGATTTAAAAATAAAAAAAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAg < 1:3149449/100‑1 (MQ=255) gaTTTAAAAAT‑AAAAAAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGc < 1:3935656/100‑1 (MQ=255) gaTTTAAAAAT‑AAAAAAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGc < 1:54286/100‑1 (MQ=255) gaTTTAAAAAT‑AAAAAAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGc < 1:2103187/100‑1 (MQ=255) taaaaat‑aaaaaAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGGAATGCAGCt < 1:385369/100‑1 (MQ=255) taaaaat‑aaaaaAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGcc < 1:1836346/100‑2 (MQ=255) taaaaat‑aaaaaAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCt < 1:110747/100‑1 (MQ=255) taaaaat‑aaaaaAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCt < 1:5745331/100‑1 (MQ=255) taaaaat‑aaaaaAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCt < 1:1809142/100‑1 (MQ=255) taaaaat‑aaaaaAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCt < 1:5690993/100‑1 (MQ=255) taaaaat‑aaaaaAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCt < 1:2424679/100‑1 (MQ=255) taaaaat‑aaaaaAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCt < 1:4537435/100‑1 (MQ=255) aaaaat‑aaaaaAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCTa < 1:4083389/100‑1 (MQ=255) aaaat‑aaaaaAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCTAg < 1:1920813/100‑1 (MQ=255) aaaat‑aaaaaAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCTAg < 1:357741/100‑1 (MQ=255) aaat‑aaaaaAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCTAGc < 1:893438/100‑1 (MQ=255) aaat‑aaaaaAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCTAGc < 1:3786993/100‑1 (MQ=255) aataaaaaaaaCTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCTAGc < 1:2828594/96‑1 (MQ=255) t‑aaaaaAACTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCTAGCATg < 1:5195880/100‑1 (MQ=255) tccgatcTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCTAGCATGCt < 1:1398821/94‑1 (MQ=255) gaaaaaCTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCTAGCATGCt < 1:197697/99‑1 (MQ=255) ccgatcttGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCTAGCATGCt < 1:286284/93‑1 (MQ=255) aaaaaaCTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCTAGCATGCt < 1:5016633/100‑1 (MQ=255) aaaaaaCTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCTAGCATGCt < 1:5651728/100‑1 (MQ=255) cgatcTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCTAGCATGCtag < 1:613044/96‑2 (MQ=255) aaaaCTGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCTAGCATGCtat < 1:88415/100‑1 (MQ=255) tGGTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCTAGCATGCTATATAcc < 1:3934825/100‑2 (MQ=255) ggTATTTCGAATATTTGTGTATAAAACATGCCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCTAGCATGCTATATACTa < 1:4819019/100‑1 (MQ=255) ggTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCTAGCATGCTATATACTa < 1:5530518/100‑1 (MQ=255) ggTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCTAGCATGCTATATACTa < 1:4089023/100‑1 (MQ=255) ggTATTTCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCTAGCATGCTATATACTa < 1:2740492/100‑1 (MQ=255) | TTTGCTGATTGATTTTGTAAGCGAGTACCGAACCAACAATAATACACAATAATATGATGATGAGATTTAAAAAT‑AAAAAAACTGGTATTCCGAATATTTGTGTATAAAACATACCTTGAAAATAGATGATATTTACAAAAACTTTATCGATGAACAGAAATGCAGCTAGCATGCTATATACTA > NC_007793/2027027‑2027209 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |