| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 1,955,443 | C→A | W287L (TGG→TTG) | SAUSA300_RS09680 ← | leucotoxin LukDv |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 1,955,443 | 0 | C | A | 90.0% | 20.7 / ‑4.9 | 10 | W287L (TGG→TTG) | SAUSA300_RS09680 | leucotoxin LukDv |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base A (0/9); total (0/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 | |||||||||||
CGTACCGATTAATTTAACAGTATGGTTTTGCCAGTCAACTTCATAAGTAGATGTAAACGTTACTGTATTTTGATTTTTGTAGTTATTACCAACCCAGTGTAGTCGATTCCATTGATTAGTATATCTATCCATTTCTCTTTGGTAAGTTACTTTGATTTT > NC_007793/1955349‑1955507 | cGTACCGATTAATTTAACAGTATGGTTTTGCCAGTCAACTTCATAAGTAGATGTAAACGTTACTGTATTTTGATTTTTGTAGTTATTTCCAACCCAgtgt < 1:3787908/100‑1 (MQ=255) aCCGATTAATTTAACAGTATGGTTTTGCCAGTCAACTTCATAAGTAGATGTAAACGTTACTGTATTTTGATTTTTGTAGTTATTACCAACCAAGTGTAGt < 1:2260029/100‑1 (MQ=255) aCCGATTAATTTAACAGTATGGTTTTGCCAGTCAACTTCATAAGTAGATGTAAACGTTACTGTATTTTGATTTTTGTAGTTATTACCAACCAAGTGTAGt < 1:4545737/100‑1 (MQ=255) cGATTAATTTAACAGTATGGTTTTGCCAGTCAACTTCATAAGTAGATGTAAACGTTACTGTATTTTGATTTTTGTAGTTATTACCAACCAAGTGTAGTca < 1:4362869/100‑2 (MQ=255) gTTTTGCCAGTCAACTTCATAAGTAGATGTAAACGTTACTGTATTTTGATTTTTGTAGTTATTACCAACCAAGTGTAGTCGATTCCATTGAtgtgtgcta < 1:4891743/100‑9 (MQ=255) aaGTAGATGTAAACGTTACTGTATTTTGATTTTTGTAGTTATTACCAACCAAGTGTAGTCGATTCCATTGATTAGTATATCTATCCATTTCTCTTTGGTa < 1:4566538/100‑1 (MQ=255) gTAGATGTAATCGTTACTGTATTTTGATTTTTGTAGTTATGACCAACCAAGTTTAGTCGATTCCATTGATTAGTATATCTATCCATTtctcgggcatact < 1:1440341/100‑10 (MQ=255) tAGATGTAAACGTTACTGTATTTTGATTTTTGTAGTTATTACCAACCAAGTGTAGTCGATTCCATTGATTAGTATATCTATCCATTTCTCTTTGGTAAgg < 1:1831869/100‑2 (MQ=255) ttACTGTATTTTGATTTTTGTAGTTATTACCAACCAAGTGTAGTCGATTCCATTGATTAGTATATCTATCCATTTCTCTTTGGTAAGTTACTTTGAtttt < 1:2153261/100‑1 (MQ=255) ttACTGTATTTTGATTTTTGTAGTTATTACCAACCAAGTGTAGTCGATTCCATTGATTAGTATATCTATCCATTTCTCTTTGGTAAGTTACTTTGAtttt < 1:5163548/100‑1 (MQ=255) | CGTACCGATTAATTTAACAGTATGGTTTTGCCAGTCAACTTCATAAGTAGATGTAAACGTTACTGTATTTTGATTTTTGTAGTTATTACCAACCCAGTGTAGTCGATTCCATTGATTAGTATATCTATCCATTTCTCTTTGGTAAGTTACTTTGATTTT > NC_007793/1955349‑1955507 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |