Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_007793 1,929,120 A→C intergenic (‑206/‑215) SAUSA300_RS09560 ← / → SAUSA300_RS09565 transposase/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077931,929,1200AC96.7% 1715.5 / 26.8 642intergenic (‑206/‑215)SAUSA300_RS09560/SAUSA300_RS09565transposase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (12/9);  new base C (603/18);  total (615/27)
Fisher's exact test for biased strand distribution p-value = 2.09e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 642 total aligned reads displayed.

TGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAAGGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGT  >  NC_007793/1929046‑1929194
                                                                           |                                                                          
tGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAAGGTGATGCTTATTTTCGTTCACATCATAGc                                                   >  1:1285572/1‑100 (MQ=255)
   cGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAAGGTGATGCTTATTTTCGTTCAgatcggaagagc                                                >  1:5528802/1‑92 (MQ=39)
          ataataGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAAGGTGATGCTTATTTTCGTTCACATCATAGCACCAGtcacc                                         <  1:4655397/100‑3 (MQ=255)
              taatagAGTCGCCTATCTCTCAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTgg                                    <  1:3973980/97‑1 (MQ=255)
                       gaacTATCTCTCAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGct                             >  1:5488120/4‑99 (MQ=255)
                       cGCCTATCTCTCAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGct                             >  1:3266326/1‑99 (MQ=255)
                       cGCCTATCTCTCAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGct                             >  1:1986531/1‑99 (MQ=255)
                          ttATCTCTCAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgtt                          >  1:423055/2‑96 (MQ=255)
                                ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:4194108/1‑98 (MQ=255)
                                ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:4137573/1‑98 (MQ=255)
                                ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:261178/1‑98 (MQ=255)
                                ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:4089695/1‑98 (MQ=255)
                                ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:5162024/1‑98 (MQ=255)
                                ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:3574703/1‑98 (MQ=255)
                                ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:4577032/1‑98 (MQ=255)
                                ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:3144259/1‑98 (MQ=255)
                                ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:3210776/1‑98 (MQ=255)
                                ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:4833105/1‑98 (MQ=255)
                                ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:1337803/1‑98 (MQ=255)
                                ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:3721702/1‑98 (MQ=255)
                                ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:912593/1‑98 (MQ=255)
                                ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:3319661/1‑98 (MQ=255)
                                ctcAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGCCATCAGTGGCTGTGCTGTTGCGtat                    >  1:2022141/1‑98 (MQ=255)
                                ctcAGGCGTCAA‑TCA‑ACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTAGCTGTGCTGTTGCGtatta                  >  1:2095562/1‑99 (MQ=255)
                                ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCgcatta                  >  1:5399684/1‑95 (MQ=255)
                                ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:2305763/1‑99 (MQ=255)
                                ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:4993119/1‑99 (MQ=255)
                                ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:5245470/1‑99 (MQ=255)
                                ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:5446144/1‑99 (MQ=255)
                                ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:3344641/1‑99 (MQ=255)
                                ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:3459373/1‑99 (MQ=255)
                                ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:2429145/1‑99 (MQ=255)
                                ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:2161219/1‑99 (MQ=255)
                                ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:624282/1‑99 (MQ=255)
                                ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:4336904/1‑99 (MQ=255)
                                ctcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:439533/1‑99 (MQ=255)
                                accAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                    >  1:2374941/3‑98 (MQ=255)
                                 tcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattat                 >  1:2924666/1‑98 (MQ=255)
                                 tcAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattat                 >  1:3009603/1‑98 (MQ=255)
                                  cAGTCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                  >  1:3873095/1‑99 (MQ=255)
                                  cAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattata                >  1:1546303/1‑97 (MQ=255)
                                  cAGCCGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtacac                  <  1:2978767/100‑5 (MQ=255)
                                      cGTCAACTTAGGCGCAGCGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattatact              >  1:1664267/1‑95 (MQ=255)
                                      cGTCAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattatact              >  1:68008/1‑95 (MQ=255)
                                         cAACTTAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAt           >  1:4781522/1‑100 (MQ=255)
                                            tttAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg        >  1:4625841/1‑100 (MQ=255)
                                            gttAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg        >  1:5596110/2‑100 (MQ=255)
                                            cttAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg        >  1:4042052/2‑100 (MQ=255)
                                            ctaaggcGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg        >  1:1485823/7‑100 (MQ=255)
                                            cgtAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg        >  1:2597264/3‑100 (MQ=255)
                                             ttAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc       >  1:2206382/1‑100 (MQ=255)
                                             ttAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc       >  1:1147149/1‑100 (MQ=255)
                                             ttAGGCGCAGAGAGGAGGTGCAGTACTTTGCTAATCATTTTCGTTCACATCATAGCAACAGTCATCAGTGGATGTGCTGTTGCGTATTATACTTATTGGc       >  1:824070/1‑100 (MQ=255)
                                             gcaggcGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc       >  1:1312625/6‑100 (MQ=255)
                                             ctAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc       >  1:1006017/2‑100 (MQ=255)
                                             ctAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc       >  1:4905845/2‑100 (MQ=255)
                                             ccaggcGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc       >  1:2666242/6‑100 (MQ=255)
                                             atAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc       >  1:5095349/2‑100 (MQ=255)
                                             atAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc       >  1:2830830/2‑100 (MQ=255)
                                             atAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc       >  1:1735358/2‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCGCATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:3891521/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATTCTTATTGCCt      >  1:4471790/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:504608/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:5290139/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:5774282/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:4517856/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:941956/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:1064497/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:1247442/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:1896336/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      <  1:2512845/100‑1 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:2688109/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:2718848/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:2742089/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:2765114/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:289393/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:3033636/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:3100912/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:3419428/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:3508432/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:1416662/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:3675463/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:3758277/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:3825330/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:3946527/1‑100 (MQ=255)
                                              tAGGCGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:4266964/1‑100 (MQ=255)
                                              caggcGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt      >  1:3616974/5‑100 (MQ=255)
                                               aggcGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtt     >  1:751493/4‑99 (MQ=255)
                                               aggcGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtt     >  1:1598232/4‑99 (MQ=255)
                                               aggcGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtt     >  1:4292293/4‑99 (MQ=255)
                                               aggcGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtt     >  1:1638235/4‑99 (MQ=255)
                                               aggcGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtt     >  1:1808082/4‑99 (MQ=255)
                                               aggcGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtt     >  1:5720334/4‑99 (MQ=255)
                                               aggcGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtt     >  1:5667533/4‑99 (MQ=255)
                                               aggcGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtt     >  1:4947531/4‑99 (MQ=255)
                                               aggcGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtt     >  1:4440871/4‑99 (MQ=255)
                                               aggcGCAGAGAGGAGGTGCATTACCTTGCTAATCATTTTCGTTCAAATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGAATTATAATTATTGGCtt     >  1:1850883/4‑99 (MQ=255)
                                                ggcGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtta    >  1:1214177/3‑98 (MQ=255)
                                                 gcGCAGAGAGGAGGTGCATTACTTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAg   >  1:5190401/2‑100 (MQ=255)
                                                 aCGCAGAGAGGAGGTGTA‑TAAGGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGt  <  1:4862073/100‑1 (MQ=255)
                                                                           |                                                                          
TGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAAGGTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGT  >  NC_007793/1929046‑1929194

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑