| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 1,897,920 | C→T | V118I (GTT→ATT) | SAUSA300_RS09370 ← | diaminohydroxyphosphoribosylaminopyrimidine deaminase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 1,897,920 | 0 | C | T | 98.6% | 191.8 / ‑4.9 | 69 | V118I (GTT→ATT) | SAUSA300_RS09370 | diaminohydroxyphosphoribosylaminopyrimidine deaminase |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (1/67); total (1/68) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.23e-01 | |||||||||||
CAGATACTTTCACTGTAATTTGTGGCAGTTGCTTTGCTTTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAACCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCTAACGAATTGTCTTTTGTTGCGTATACTACTTTTGCTATCTTACAATCA > NC_007793/1897824‑1898011 | cAGATACTTTCACTGTAATTTGTGGCAGTTGCTTTGCTTTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAAtctc < 1:3662315/100‑1 (MQ=255) cTTTCACTGTAATTTGTGGCAGTTGCTTTGCTTTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCaaggat < 1:2880483/100‑5 (MQ=255) tCACTGTAATTTGTGGCAGTTGCTTTGCTTTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTg < 1:116469/100‑1 (MQ=255) tCACTGTAATTTGTGGCAGTTGCTTTGCTTTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTg < 1:9070/100‑1 (MQ=255) tCACTGTAATTTGTGGCAGTTGCTTTGCTTTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTg < 1:894973/100‑1 (MQ=255) tCACTGTAATTTGTGGCAGTTGCTTTGCTTTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTg < 1:3886800/100‑1 (MQ=255) cACTGTAATTTGTGGCAGTTGCTTTGCTTTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGa < 1:837987/100‑1 (MQ=255) cTGTAATTTGTGGCAGTTGCTTTGCTTTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAgg < 1:4868661/100‑2 (MQ=255) tGTAATTTGTGGCAGTTGCTTTGCTTTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGcc < 1:4040391/100‑1 (MQ=255) tGTAATTTGTGGCAGTTGCTTTGCTTTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGcc < 1:832787/100‑1 (MQ=255) tAATTTGTGGCAGTTGCTTTGCTTTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCg < 1:1553060/100‑1 (MQ=255) tAATTTGTGGCAGTTGCTTTGCTTTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATCCAATCTCAATACCGTGAGCCCg < 1:1310018/100‑1 (MQ=255) aTTTGTGGCAGTTGCTTTGCTTTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCggt < 1:2370386/100‑3 (MQ=255) tttGTGGCAGTTGCTTTGCTTTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTac < 1:4033165/100‑2 (MQ=255) ttGTGGCAGTTGCTTTGCTTTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGCTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGtgaa < 1:1843363/100‑4 (MQ=255) gtgGCAGTTGCTTTGCTTTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACgc < 1:4759019/100‑2 (MQ=255) gCAGTTGCTTTGCTTTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGtcgg < 1:4760382/100‑3 (MQ=255) ccttccgatctttagctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCtcatt < 1:1400139/91‑2 (MQ=255) ttgctttgctTTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCtcatcc < 1:2473359/100‑2 (MQ=255) ttgctttgctTTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTCCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCtcatca < 1:5368696/100‑1 (MQ=255) tgctttgcttTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCtcatagt < 1:2224216/100‑4 (MQ=255) gctttgctttTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCAcc < 1:898861/100‑1 (MQ=255) gctttgctttTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCAcc < 1:5461331/100‑1 (MQ=255) gctttgctttTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCAcc < 1:2326728/100‑1 (MQ=255) gctttgctttTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCAcc < 1:5710762/100‑1 (MQ=255) gatctgcttttgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCAcc < 1:51637/96‑1 (MQ=255) tttgcttttgctTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCac < 1:3727662/100‑2 (MQ=255) tttgcttttgctTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCAt < 1:698129/100‑1 (MQ=255) tgcttttgcttt‑AAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCAcccacaa < 1:3115748/100‑6 (MQ=255) cttttgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCAtgtgt < 1:4041319/100‑1 (MQ=255) ttttgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCAtgtgtg < 1:1086581/100‑1 (MQ=255) ttttgcattAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCAtgtgtg < 1:3308120/100‑1 (MQ=255) tttgctttAAAAAAGTCTTGGTATAGTTGTGATGCCCGTTCCTCATCAACGCATTCAATCGCAATACCGTGAGCCCGTAACGTCTCATCACCAtgtgtgg < 1:4519065/100‑2 (MQ=255) tttgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCAtgtgtgg < 1:58294/100‑2 (MQ=255) tttgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCAtgtgtgg < 1:842295/100‑2 (MQ=255) tttgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCAtgtgtga < 1:5369177/100‑2 (MQ=255) tttgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATgtgtgt < 1:589712/100‑1 (MQ=255) ttgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCAtgtgtgca < 1:1432704/100‑3 (MQ=255) ttgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATgtgtgtg < 1:4582775/100‑2 (MQ=255) ttgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTc < 1:4923223/100‑1 (MQ=255) ttgcttt‑AAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTcc < 1:5107077/100‑2 (MQ=255) tgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCt < 1:5034106/100‑1 (MQ=255) tgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCt < 1:1530103/100‑1 (MQ=255) tgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCt < 1:5090739/100‑1 (MQ=255) tgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCt < 1:618519/100‑1 (MQ=255) tgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCt < 1:626779/100‑1 (MQ=255) tgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCt < 1:2793853/100‑1 (MQ=255) tgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCt < 1:4521923/100‑1 (MQ=255) tgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCt < 1:4453360/100‑1 (MQ=255) tgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCt < 1:1830970/100‑1 (MQ=255) tgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCt < 1:4035855/100‑1 (MQ=255) tgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCt < 1:1768114/100‑1 (MQ=255) tgctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCt < 1:138921/100‑1 (MQ=255) gctttAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCTa < 1:5548434/100‑1 (MQ=255) gctttAAAAAAGTCTTGGTATAAGTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCTa < 1:4629926/100‑1 (MQ=255) tGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCTAACGAATTGTCTTttg > 1:3823781/1‑100 (MQ=255) tccgatctggCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCTAACGAATTGTCTTTTGTTGCGt < 1:4202992/91‑1 (MQ=255) tccgatctggCCCGTTCATCATCAACGCATTCAACCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCTAACGAATTGTCTTTTGTTGCGt < 1:787340/91‑1 (MQ=255) aaTTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCTAACGAATTGTCTTTTGTTGCGt < 1:5427606/100‑1 (MQ=255) aaTTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCTAACGAATTGTCTTTTGTTGCGt < 1:3113549/100‑1 (MQ=255) aTTGTGATGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCTAACGAATTGTCTTTTGTTGCGta < 1:150555/100‑1 (MQ=255) ccgatctGCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCTAACGAATTGTCTTTTGTTGCGtag < 1:4924141/94‑2 (MQ=255) gCCCGTTCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCTAACGAATTGTCTTTTGTTGCGTATACTACtt < 1:5371156/100‑1 (MQ=255) ttCATCATCAACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCTAACGAATTGTCTTTTGTTGCGTATACTACTTTTGCt < 1:4599214/100‑1 (MQ=255) ccgatcttcaACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCTAACGAATTGTCTTTTGTTGCGTATACTACTTTTGCt < 1:475127/97‑1 (MQ=255) catcatcaACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCTAACGAATTGTCTTTTGTTGCGTATACTACTTTTGCTAt < 1:3973889/100‑1 (MQ=255) tcaACGCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCTAACGAATTGTCTTTTGTCGCGTATACTACTTTTGCTATCTTag < 1:2689712/100‑2 (MQ=255) taaCCCATTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCTAACGAATTGTCTTTTGTTGCGTATACTACTTTTGCTATCTTAca < 1:5485347/99‑1 (MQ=255) cGCACTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCTAACGAATTGTCTTTTGTTGCGTATACTACTTTTGCTATCTTAcaatc < 1:1980886/100‑1 (MQ=255) gtaTTCAATCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCTAACGAATTGTCTTTTGTTGCGTATACTACTTTTGCTATCTTAcaatca < 1:291522/98‑1 (MQ=255) | CAGATACTTTCACTGTAATTTGTGGCAGTTGCTTTGCTTTTGCTTTAAAAAAGTCTTGGTATAATTGTGATGCCCGTTCATCATCAACGCATTCAACCTCAATACCGTGAGCCCGTAACGTCTCATCACCATGTGTGTCTAACGAATTGTCTTTTGTTGCGTATACTACTTTTGCTATCTTACAATCA > NC_007793/1897824‑1898011 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |