| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 1,771,057 | A→T | I143I (ATT→ATA) | SAUSA300_RS08815 ← | hydroxymethylbilane synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 1,771,057 | 0 | A | T | 98.9% | 253.9 / NA | 90 | I143I (ATT→ATA) | SAUSA300_RS08815 | hydroxymethylbilane synthase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base T (1/88); minor base G (0/1); total (1/89) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCATTCTTCTTAAACCAGCTGCAGCTAAAATAATCGCATCATAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTAATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCTTCTGGCAATTGGGAT > NC_007793/1770960‑1771144 | ccATTCTTCTTAAACCAGCTGCAGCTAAAATAATCGCATCATAATCTTCAGTTTGTAACTTTTCT‑ATCGTGTATCTATATTACCTCTAATCCATTTTAtt < 1:2256557/100‑2 (MQ=255) cgatcttAAACCAGCTGCAGCTAAAATAATCGCATCATAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATctct < 1:5209190/97‑1 (MQ=255) aaCCAGCTGCAGCTAAAATAATCGCATCATAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAgg < 1:3923383/100‑1 (MQ=255) aCCAGCTGCAGCTAAAATAATCGCATCATAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGa > 1:5321855/1‑100 (MQ=255) cTGCAGCTAAAATAATCGCATCATAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACtt < 1:3179264/100‑1 (MQ=255) tCGCATCATAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTCCCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGc < 1:1709654/100‑1 (MQ=255) tCGCATCATAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATGATATTTGTGc < 1:3805427/100‑1 (MQ=255) tCGCATCATAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGc < 1:5617776/100‑1 (MQ=255) tCGCATCATAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGc < 1:4958952/100‑1 (MQ=255) tCGCATCATAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGc < 1:4455221/100‑1 (MQ=255) tCGCATCATAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGc < 1:1934937/100‑1 (MQ=255) tCGCATCATAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGc < 1:1726652/100‑1 (MQ=255) tCGCATCATAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAAGTAGGATACTTAGATAATATTTGTGc < 1:21605/100‑1 (MQ=255) tCGCATCATAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCGCTAAAGTAGGATACTTAGATAATATTTGTGc < 1:849200/100‑1 (MQ=255) gctcttccgaTCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGca < 1:3958411/91‑1 (MQ=255) cGCATCATAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGca < 1:4848268/100‑1 (MQ=255) cGCATCATAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGca < 1:5015850/100‑1 (MQ=255) gCATCATAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGcat < 1:790589/100‑2 (MQ=255) gCATCATAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGcag < 1:2988307/100‑2 (MQ=255) gCATCATAATCTTCAGTTTGTAACTTCTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGcac < 1:5437352/100‑1 (MQ=255) tcttccgaTCTGCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGcagg < 1:4727431/93‑3 (MQ=255) catcatAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGcaga < 1:2562968/100‑3 (MQ=255) catAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCacg < 1:639768/100‑1 (MQ=255) catAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCacg < 1:4737782/100‑1 (MQ=255) atAATTTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCacga < 1:4502179/100‑1 (MQ=255) tCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTa < 1:3580593/100‑1 (MQ=255) tCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTa < 1:5032412/100‑1 (MQ=255) cTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCGCCACGACGTaa < 1:5185002/100‑1 (MQ=255) tCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATg < 1:2069605/100‑1 (MQ=255) tCAGTTTGTAACTTTTCTAATCGTGTAGCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATg < 1:5452808/100‑1 (MQ=255) cAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGa < 1:4399729/100‑1 (MQ=255) cAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGa < 1:189462/100‑1 (MQ=255) tttGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACt < 1:2440837/100‑1 (MQ=255) ttGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTGATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTa < 1:5008802/100‑1 (MQ=255) aCTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTAcc < 1:1670923/100‑1 (MQ=255) ttttCTAATCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATTAACTAGTAcctg < 1:5270565/100‑3 (MQ=255) tCGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTg < 1:4997336/100‑1 (MQ=255) cGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGc < 1:1784891/100‑1 (MQ=255) cGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGc < 1:2915919/100‑1 (MQ=255) cGTGTATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGc < 1:1632990/100‑1 (MQ=255) gtgtATCTATATTACCTCTAATCCAGTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTgta < 1:5119412/100‑3 (MQ=255) tgtATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGcca < 1:4982296/100‑2 (MQ=255) tgtATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGcag < 1:2143977/100‑3 (MQ=255) tgtATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCt < 1:4827402/100‑1 (MQ=255) tgtATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCt < 1:4621857/100‑1 (MQ=255) tgtATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCt < 1:4273894/100‑1 (MQ=255) gtATCTATATTGCCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCtt < 1:1570311/100‑1 (MQ=255) gtATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAGTACTGCCtt < 1:760023/100‑1 (MQ=255) gtATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCtt < 1:5317933/100‑1 (MQ=255) gtATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCtt < 1:2251779/100‑1 (MQ=255) gtATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCtt < 1:2184357/100‑1 (MQ=255) gtATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCtt < 1:274319/100‑1 (MQ=255) gtATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCtt < 1:2761670/100‑1 (MQ=255) gtATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCtt < 1:4732279/100‑1 (MQ=255) gtATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCtt < 1:3095927/100‑1 (MQ=255) gtATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCtt < 1:5134318/100‑1 (MQ=255) gtATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCtt < 1:3361259/100‑1 (MQ=255) gtATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCtt < 1:753813/100‑1 (MQ=255) gtATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCtt < 1:2123075/100‑1 (MQ=255) gtATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCtt < 1:1403221/100‑1 (MQ=255) gtATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCtg < 1:4147136/100‑2 (MQ=255) tATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCttt < 1:4158609/100‑2 (MQ=255) tATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCttt < 1:4525344/100‑2 (MQ=255) tATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCttg < 1:1361096/100‑2 (MQ=255) tATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCttg < 1:4961947/100‑2 (MQ=255) tATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCttg < 1:2251319/100‑2 (MQ=255) tATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCtta < 1:5253107/100‑2 (MQ=255) tATCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCtag < 1:4140132/100‑3 (MQ=255) aTCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGcccgag < 1:2879397/100‑5 (MQ=255) aTCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCttaa < 1:4909549/100‑3 (MQ=255) aTCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCtaca < 1:1774947/100‑4 (MQ=255) aTCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCTTca < 1:4597502/100‑2 (MQ=255) aTCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCTTca < 1:3678205/100‑2 (MQ=255) aTCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCTTCt < 1:3263429/100‑1 (MQ=255) tCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCttaga < 1:1241891/100‑4 (MQ=255) tCTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCTTCta < 1:5774894/100‑2 (MQ=255) cTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCTTCTgg < 1:2904993/100‑1 (MQ=255) cTATATTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCTTCTgg < 1:10375/100‑1 (MQ=255) tataTTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCTTCTggt < 1:2259191/100‑2 (MQ=255) tataTTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCTTCTggg < 1:5475004/100‑2 (MQ=255) tataTTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCTTCTGGc < 1:1464070/100‑1 (MQ=255) atatTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCTTCTgggg < 1:4608417/100‑3 (MQ=255) atTACCTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCTTCTGGCAAt < 1:3294145/100‑1 (MQ=255) ccTCTAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCTTCTGGCAATTggg < 1:1084020/100‑1 (MQ=255) ctctAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCTTCTGGCAATTGGGa < 1:1855880/100‑1 (MQ=255) tctAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCTTCTGGCAATTGGGAt < 1:1608855/100‑1 (MQ=255) tctAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCTTCTGGCAATTGGGAt < 1:4244944/100‑1 (MQ=255) tctAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCTTCTGGCAATTGGGAt < 1:1426021/100‑1 (MQ=255) tctAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCTTCTGGCAATTGGGAt < 1:3234893/100‑1 (MQ=255) tctAATCCATTTTATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCTTCTGGCAATTGGGAt < 1:1026537/100‑1 (MQ=255) | CCATTCTTCTTAAACCAGCTGCAGCTAAAATAATCGCATCATAATCTTCAGTTTGTAACTTTTCTAATCGTGTATCTATATTACCTCTAATCCATTTAATCTCTAAATTAGGATACTTAGATAATATTTGTGCACCACGACGTAATGAACTAGTACCAATAATACTGCCTTCTGGCAATTGGGAT > NC_007793/1770960‑1771144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |