D66 :: BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	1,631,245	A→G	F17F (TTT→TTC)	SAUSA300_RS08060 ←	integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	1,631,245	0	A	G	99.1%	293.7 / ‑4.8	109	F17F (TTT→TTC)	SAUSA300_RS08060	integrase
Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (0/108); total (0/109)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

Only 100 of 109 total aligned reads displayed.

TTTGCATTTTCAATAGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTCTTCAAATAGAGCAAACTCCTTACCTCTATCCATAGTTATACTTTTGGGTAATAATGGTTTCATAATATTTATAATCTCATTACAAACTACATTGGATTTACGTGTATT  >  NC_007793/1631150‑1631340

tttACATTTTCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACt                                                                                             <  1:2214993/100‑1 (MQ=255)

tttACATTTTCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACt                                                                                             <  1:4566601/100‑1 (MQ=255)

    cATTTTCAATGGAACCGCGTTGATATGGACAACCCAAAACACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCtt                                                                                         <  1:4380720/100‑1 (MQ=255)

    cATTTTCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCtt                                                                                         <  1:337364/100‑1 (MQ=255)

    cATTTTCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCtt                                                                                         <  1:4817515/100‑1 (MQ=255)

    cATTTTCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCtt                                                                                         <  1:1697105/100‑1 (MQ=255)

    cATTTTCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCtt                                                                                         <  1:3871172/100‑1 (MQ=255)

     aTTTTCAATGGAACCACGTTGATATGGACAGCCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCttg                                                                                        <  1:2395359/100‑2 (MQ=255)

      ttttCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTat                                                                                       <  1:3489244/100‑2 (MQ=255)

       tttCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTAcc                                                                                      <  1:2482698/100‑1 (MQ=255)

       tttCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTAca                                                                                      <  1:812636/100‑2 (MQ=255)

        ttCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACct                                                                                     <  1:840389/100‑1 (MQ=255)

        ttCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACct                                                                                     <  1:5607313/100‑1 (MQ=255)

        ttCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACct                                                                                     <  1:5538408/100‑1 (MQ=255)

        ttCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACct                                                                                     <  1:832646/100‑1 (MQ=255)

        ttCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTAAAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACct                                                                                     <  1:4645104/100‑1 (MQ=255)

         tCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTAccgc                                                                                    <  1:4464720/100‑3 (MQ=255)

         tCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTAccgc                                                                                    <  1:1842971/100‑3 (MQ=255)

         tCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTAccag                                                                                    <  1:3403071/100‑3 (MQ=255)

         tCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACctc                                                                                    <  1:4249644/100‑1 (MQ=255)

         tCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACcta                                                                                    <  1:4361684/100‑2 (MQ=255)

         tCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACcta                                                                                    <  1:5736951/100‑2 (MQ=255)

         tCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACCCCTTACctc                                                                                    <  1:5612583/100‑1 (MQ=255)

          cAATGGAACCACGTTGATGTGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACctct                                                                                   <  1:5777382/100‑1 (MQ=255)

          cAATGGAACCACGTTGATATGGACAACCCAAATCACTAAACTAAATACTACAATACAATTCCTCTTCTATTTGTTCAAATAGAGCGAACTCCTTACctct                                                                                   <  1:2729182/100‑1 (MQ=255)

          cAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTAccagc                                                                                   <  1:3019974/100‑4 (MQ=255)

          cAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTAccagc                                                                                   <  1:655936/100‑4 (MQ=255)

          cAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTAccaca                                                                                   <  1:1026796/100‑4 (MQ=255)

          cAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACctct                                                                                   <  1:2465006/100‑1 (MQ=255)

          cAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACctct                                                                                   <  1:4147356/100‑1 (MQ=255)

          cAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACctct                                                                                   <  1:5465454/100‑1 (MQ=255)

          cAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACctcg                                                                                   <  1:3870704/100‑2 (MQ=255)

           aaTGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTAccagat                                                                                  <  1:789953/100‑5 (MQ=255)

           aaTGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACctggg                                                                                  <  1:1375585/100‑4 (MQ=255)

           aaTGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACctctg                                                                                  <  1:3712315/100‑2 (MQ=255)

           aaTGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACctcga                                                                                  <  1:1940958/100‑3 (MQ=255)

           aaTGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTa                                                                                  <  1:4224919/100‑1 (MQ=255)

           aaTGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTa                                                                                  <  1:1139432/100‑1 (MQ=255)

           aaTGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTa                                                                                  <  1:2515427/100‑1 (MQ=255)

            atggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTag                                                                                 <  1:426990/97‑2 (MQ=255)

            atggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTAt                                                                                 <  1:2518414/97‑1 (MQ=255)

             tggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTAcccacaca                                                                                <  1:1422383/98‑7 (MQ=255)

             tggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTagc                                                                                <  1:3382626/98‑3 (MQ=255)

             tggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTacg                                                                                <  1:3402596/98‑3 (MQ=255)

             tggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATc                                                                                <  1:129726/98‑1 (MQ=255)

              ggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATcc                                                                               <  1:3046299/99‑1 (MQ=255)

              ggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATcc                                                                               <  1:5063965/99‑1 (MQ=255)

              ggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATcc                                                                               <  1:4886932/99‑1 (MQ=255)

              ggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATcc                                                                               <  1:1741115/99‑1 (MQ=255)

              ggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATcc                                                                               <  1:461888/99‑1 (MQ=255)

              ggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATcc                                                                               <  1:2695058/99‑1 (MQ=255)

              ggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATcc                                                                               <  1:2998274/99‑1 (MQ=255)

              ggAACCACGTTGAGATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTAGcc                                                                               <  1:3337591/99‑1 (MQ=255)

               gAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTagcac                                                                              <  1:1942415/100‑5 (MQ=255)

               gAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCa                                                                              <  1:1679098/100‑1 (MQ=255)

               gAACCACGTTGATATGGACAACCCAAATCACT‑AAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAt                                                                             <  1:5240341/100‑1 (MQ=255)

                aaCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAt                                                                             <  1:1359126/100‑1 (MQ=255)

                aaCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAt                                                                             <  1:5016646/100‑1 (MQ=255)

                aaCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAt                                                                             <  1:1419673/100‑1 (MQ=255)

                aaCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAt                                                                             <  1:1375989/100‑1 (MQ=255)

                aaCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAt                                                                             <  1:193692/100‑1 (MQ=255)

                aaCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAt                                                                             <  1:4329398/100‑1 (MQ=255)

                aaCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAt                                                                             <  1:3624670/100‑1 (MQ=255)

                aaCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAt                                                                             <  1:366740/100‑1 (MQ=255)

                 aCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCact                                                                            <  1:2499835/100‑3 (MQ=255)

                 aCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAtg                                                                            <  1:746473/100‑2 (MQ=255)

                 aCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATa                                                                            <  1:93568/100‑1 (MQ=255)

                  ccACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCCATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATccctgt                                                                           <  1:3718681/100‑5 (MQ=255)

                  ccACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCagag                                                                           <  1:4055308/100‑1 (MQ=255)

                  ccACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAtct                                                                           <  1:558298/100‑3 (MQ=255)

                  ccACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATac                                                                           <  1:4643534/100‑2 (MQ=255)

                   cACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGt                                                                          <  1:3690881/100‑1 (MQ=255)

                    aCGTTGATATGGACAACCCAAATCACTAAAATAAATCCTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGtt                                                                         <  1:820248/100‑1 (MQ=255)

                    aCGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTGTCCATAGtt                                                                         <  1:2828424/100‑1 (MQ=255)

                    aCGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGtt                                                                         <  1:3717605/100‑1 (MQ=255)

                    aCGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGtt                                                                         <  1:4972196/100‑1 (MQ=255)

                    aCGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGtt                                                                         <  1:4348237/100‑1 (MQ=255)

                    aCGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGtt                                                                         <  1:1347936/100‑1 (MQ=255)

                     cGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTta                                                                        <  1:5705429/100‑1 (MQ=255)

                      gTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTtat                                                                       <  1:1812798/100‑1 (MQ=255)

                      gTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTtag                                                                       <  1:1519668/100‑2 (MQ=255)

                       ttGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTtatg                                                                      <  1:3506572/100‑2 (MQ=255)

                        tGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTtatgc                                                                     <  1:3060776/100‑3 (MQ=255)

                        tGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTtatgc                                                                     <  1:1476085/100‑3 (MQ=255)

                        tGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTtatgc                                                                     <  1:1716435/100‑3 (MQ=255)

                         gATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTtatgcc                                                                    <  1:862197/100‑4 (MQ=255)

                         gATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTTATGCt                                                                    <  1:3891819/100‑1 (MQ=255)

                         gATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTTATGCt                                                                    <  1:2617824/100‑1 (MQ=255)

                          atatGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTTATGCtt                                                                   <  1:432788/100‑1 (MQ=255)

                           tatGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTTATGCttg                                                                  <  1:2683990/100‑2 (MQ=255)

                           tatGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTTATGCtta                                                                  <  1:3014015/100‑2 (MQ=255)

                                                                   attcaTCTTCTATTTGTTCAAATAGAGCGAACTCCTTCCCTCTATCCATAGTTATGCTTTTTGGTAATAATGGTTTCATAATATTTATAATCTCATTACa                          <  1:1251272/100‑1 (MQ=255)

                                                                         cttctATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTTATGCTTTTTGGTAATAATGGTTTCATAATATTTATAATCTCATTACAAACTAc                    <  1:119011/100‑1 (MQ=255)

                                                                          ttctATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTTATGCTTTTTGGTAATAATGGTTTCATAATATTTATAATCTCATTACAAACTAcg                   <  1:5443369/100‑2 (MQ=255)

                                                                           tctATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTTATGCTTTTTGGTAATAATGGTTTCATAATATTTATAATCTCATTACAAACTACag                  <  1:4227015/100‑2 (MQ=255)

                                                                            ctATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTTATGCTTTTTGGTAATAATGGTTTCATAATATTTATAATCTCATTATAAACTACAtc                 <  1:5680591/100‑2 (MQ=255)

                                                                            ctATTTCTTCAAATAGAGCAAGCTCCTTACCTCTATCCATAGTTATACTTTTGGGTAATAATGGTTTCATAATATTTATAATCTCATTACAAACTACAtt                 <  1:175097/100‑1 (MQ=255)

                                                                                 tgttcAAATAGAGCGAACTCCTTACCTCTATCCATAGTTATGCTTTTTGGTAATAATGGTTTCATAATATTTATAATCTCATTACAAACTACATTGGAtt            <  1:4513611/98‑1 (MQ=255)

                                                                                         tAGAGCGAACTCCTTACCTCTATCCATAGTTATGCTTTTTGGTAATAATGGTTTCATAATATTTATAATCTCATTACAAACTACATTGGATTTACgtgca    <  1:5498284/100‑3 (MQ=255)

                                                                                           gagCGAACTCCTTACCTCTATCCATAGTTATGCTTTTTGGTAATAATGGTTTCATAATATTTATAATCTCATTACAAACTACATTGGATTTACGTGTAtt  <  1:755429/100‑1 (MQ=255)

TTTGCATTTTCAATAGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTCTTCAAATAGAGCAAACTCCTTACCTCTATCCATAGTTATACTTTTGGGTAATAATGGTTTCATAATATTTATAATCTCATTACAAACTACATTGGATTTACGTGTATT  >  NC_007793/1631150‑1631340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`