D66 :: BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	1,631,232	C→G	E22Q (GAA→CAA)	SAUSA300_RS08060 ←	integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	1,631,232	0	C	G	99.1%	291.7 / ‑4.2	109	E22Q (GAA→CAA)	SAUSA300_RS08060	integrase
Reads supporting (aligned to +/- strand): ref base C (0/1); new base G (0/108); total (0/109)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.67e-01

Only 100 of 115 total aligned reads displayed.

GTCTTAAAAGTCCATTTGCATTTTCAATAGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTCTTCAAATAGAGCAAACTCCTTACCTCTATCCATAGTTATACTTTTGGGTAATAATGGTTTCATAATATTTATAATCTCATTACAAACTACATT  >  NC_007793/1631136‑1631325

ttCTTAAAAGTCCATTTACATTTTCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATttgttc                                                                                            <  1:1498882/99‑1 (MQ=255)

gTCTTAAAAGTCCATTTACATTTTCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATttgttc                                                                                            <  1:39865/100‑1 (MQ=255)

gTCTTAAAAGTCCATTTACATTTTCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATttgttc                                                                                            <  1:2982906/100‑1 (MQ=255)

gTCTTAAAAGTCCATTTACATTTTCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATttgttc                                                                                            <  1:461879/100‑1 (MQ=255)

gTCTTAAAAGTCCATTTACATTTTCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATttgttc                                                                                            <  1:4825157/100‑1 (MQ=255)

 tCTTAAAAGTCCATTTACATTTACAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCa                                                                                           <  1:3705010/100‑1 (MQ=255)

            cATTTACATTTTCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGcgat                                                                                <  1:4478562/100‑4 (MQ=255)

             aTTTACATTTTCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGcgagc                                                                               <  1:391602/100‑5 (MQ=255)

              tttACATTTTCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACt                                                                              <  1:2214993/100‑1 (MQ=255)

              tttACATTTTCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACt                                                                              <  1:4566601/100‑1 (MQ=255)

                  cATTTTCAATGGAACCGCGTTGATATGGACAACCCAAAACACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCtt                                                                          <  1:4380720/100‑1 (MQ=255)

                  cATTTTCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCtt                                                                          <  1:1697105/100‑1 (MQ=255)

                  cATTTTCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCtt                                                                          <  1:4817515/100‑1 (MQ=255)

                  cATTTTCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCtt                                                                          <  1:337364/100‑1 (MQ=255)

                   aTTTTCAATGGAACCACGTTGATATGGACAGCCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCttg                                                                         <  1:2395359/100‑2 (MQ=255)

                    ttttCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTat                                                                        <  1:3489244/100‑2 (MQ=255)

                     tttCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTAcc                                                                       <  1:2482698/100‑1 (MQ=255)

                     tttCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTAca                                                                       <  1:812636/100‑2 (MQ=255)

                      ttCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACct                                                                      <  1:1502361/100‑1 (MQ=255)

                      ttCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACct                                                                      <  1:5538408/100‑1 (MQ=255)

                      ttCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACct                                                                      <  1:5607313/100‑1 (MQ=255)

                      ttCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACct                                                                      <  1:5738905/100‑1 (MQ=255)

                      ttCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACct                                                                      <  1:832646/100‑1 (MQ=255)

                      ttCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACct                                                                      <  1:840389/100‑1 (MQ=255)

                      ttCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTAAAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACct                                                                      <  1:4645104/100‑1 (MQ=255)

                      ttCAATGGAACCACGTTGATATGGACAACCCAAATCACT‑AAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACctc                                                                     <  1:3440316/100‑1 (MQ=255)

                       tCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTAccgc                                                                     <  1:1842971/100‑3 (MQ=255)

                       tCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTAccgc                                                                     <  1:4464720/100‑3 (MQ=255)

                       tCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTAccag                                                                     <  1:3403071/100‑3 (MQ=255)

                       tCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACctc                                                                     <  1:4249644/100‑1 (MQ=255)

                       tCAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACcta                                                                     <  1:5736951/100‑2 (MQ=255)

                        cAATGGAACCACGTTGATGTGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACctct                                                                    <  1:5777382/100‑1 (MQ=255)

                        cAATGGAACCACGTTGATATGGACAACCCAAATCACTAAACTAAATACTACAATACAATTCCTCTTCTATTTGTTCAAATAGAGCGAACTCCTTACctct                                                                    <  1:2729182/100‑1 (MQ=255)

                        cAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTAccagc                                                                    <  1:3019974/100‑4 (MQ=255)

                        cAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTAccagc                                                                    <  1:655936/100‑4 (MQ=255)

                        cAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTAccaca                                                                    <  1:1026796/100‑4 (MQ=255)

                        cAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACctct                                                                    <  1:4147356/100‑1 (MQ=255)

                        cAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACctct                                                                    <  1:2465006/100‑1 (MQ=255)

                        cAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACctct                                                                    <  1:5465454/100‑1 (MQ=255)

                        cAATGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACctcg                                                                    <  1:3870704/100‑2 (MQ=255)

                         aaTGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACctctg                                                                   <  1:3712315/100‑2 (MQ=255)

                         aaTGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACctcga                                                                   <  1:1940958/100‑3 (MQ=255)

                         aaTGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTa                                                                   <  1:4224919/100‑1 (MQ=255)

                         aaTGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTa                                                                   <  1:1139432/100‑1 (MQ=255)

                         aaTGGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTa                                                                   <  1:2515427/100‑1 (MQ=255)

                          atggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTag                                                                  <  1:426990/97‑2 (MQ=255)

                          atggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTAt                                                                  <  1:2518414/97‑1 (MQ=255)

                           tggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTAcccacaca                                                                 <  1:1422383/98‑7 (MQ=255)

                           tggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTagc                                                                 <  1:3382626/98‑3 (MQ=255)

                           tggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTacg                                                                 <  1:3402596/98‑3 (MQ=255)

                           tggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATc                                                                 <  1:129726/98‑1 (MQ=255)

                            ggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATcc                                                                <  1:3046299/99‑1 (MQ=255)

                            ggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATcc                                                                <  1:461888/99‑1 (MQ=255)

                            ggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATcc                                                                <  1:1741115/99‑1 (MQ=255)

                            ggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATcc                                                                <  1:2998274/99‑1 (MQ=255)

                            ggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATcc                                                                <  1:4886932/99‑1 (MQ=255)

                            ggAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATcc                                                                <  1:2695058/99‑1 (MQ=255)

                             gAACCACGTTGATATGGACAACCCGAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATccc                                                               <  1:444835/100‑2 (MQ=255)

                             gAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTagcac                                                               <  1:1942415/100‑5 (MQ=255)

                             gAACCACGTTGATATGGACAACCCAAATCACT‑AAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAt                                                              <  1:5240341/100‑1 (MQ=255)

                              aaCCGCGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTTCCTCTATCCAt                                                              <  1:5111107/100‑1 (MQ=255)

                              aaCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAt                                                              <  1:5016646/100‑1 (MQ=255)

                              aaCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAt                                                              <  1:3965179/100‑1 (MQ=255)

                              aaCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAt                                                              <  1:1419673/100‑1 (MQ=255)

                              aaCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAt                                                              <  1:4329398/100‑1 (MQ=255)

                              aaCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAt                                                              <  1:1375989/100‑1 (MQ=255)

                              aaCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAt                                                              <  1:1359126/100‑1 (MQ=255)

                              aaCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAt                                                              <  1:366740/100‑1 (MQ=255)

                              aaCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAt                                                              <  1:2132800/100‑1 (MQ=255)

                               aCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAtg                                                             <  1:274461/100‑2 (MQ=255)

                               aCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAtg                                                             <  1:746473/100‑2 (MQ=255)

                               aCCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATa                                                             <  1:93568/100‑1 (MQ=255)

                                ccACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCCATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATccctgt                                                            <  1:3718681/100‑5 (MQ=255)

                                ccACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCagag                                                            <  1:4055308/100‑1 (MQ=255)

                                ccACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCAtct                                                            <  1:558298/100‑3 (MQ=255)

                                 cACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGt                                                           <  1:3690881/100‑1 (MQ=255)

                                  aCGTTGATATGGACAACCCAAATCACTAAAATAAATCCTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGtt                                                          <  1:820248/100‑1 (MQ=255)

                                  aCGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGtt                                                          <  1:4348237/100‑1 (MQ=255)

                                  aCGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGtt                                                          <  1:1347936/100‑1 (MQ=255)

                                  aCGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGtt                                                          <  1:4972196/100‑1 (MQ=255)

                                  aCGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGtt                                                          <  1:3717605/100‑1 (MQ=255)

                                   cGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTta                                                         <  1:5705429/100‑1 (MQ=255)

                                    gTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTtat                                                        <  1:1812798/100‑1 (MQ=255)

                                    gTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTtag                                                        <  1:1519668/100‑2 (MQ=255)

                                     ttGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTtatg                                                       <  1:3506572/100‑2 (MQ=255)

                                      tGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTtatgc                                                      <  1:1476085/100‑3 (MQ=255)

                                      tGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTtatgc                                                      <  1:3060776/100‑3 (MQ=255)

                                      tGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTtatgc                                                      <  1:1716435/100‑3 (MQ=255)

                                       gATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTtatgcc                                                     <  1:862197/100‑4 (MQ=255)

                                       gATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTTATGCt                                                     <  1:3891819/100‑1 (MQ=255)

                                       gATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTTATGCt                                                     <  1:2617824/100‑1 (MQ=255)

                                        atatGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTTATGCtt                                                    <  1:432788/100‑1 (MQ=255)

                                         tatGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTTATGCttg                                                   <  1:2683990/100‑2 (MQ=255)

                                         tatGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTTATGCtta                                                   <  1:3014015/100‑2 (MQ=255)

                                                                                 attcaTCTTCTATTTGTTCAAATAGAGCGAACTCCTTCCCTCTATCCATAGTTATGCTTTTTGGTAATAATGGTTTCATAATATTTATAATCTCATTACa           <  1:1251272/100‑1 (MQ=255)

                                                                                       cttctATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTTATGCTTTTTGGTAATAATGGTTTCATAATATTTATAATCTCATTACAAACTAc     <  1:119011/100‑1 (MQ=255)

                                                                                        ttctATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTTATGCTTTTTGGTAATAATGGTTTCATAATATTTATAATCTCATTACAAACTAcg    <  1:5443369/100‑2 (MQ=255)

                                                                                         tctATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTTATGCTTTTTGGTAATAATGGTTTCATAATATTTATAATCTCATTACAAACTACag   <  1:4227015/100‑2 (MQ=255)

                                                                                          ctATTTGTTCAAATAGAGCGAACTCCTTACCTCTATCCATAGTTATGCTTTTTGGTAATAATGGTTTCATAATATTTATAATCTCATTATAAACTACAtc  <  1:5680591/100‑2 (MQ=255)

                                                                                          ctATTTCTTCAAATAGAGCAAGCTCCTTACCTCTATCCATAGTTATACTTTTGGGTAATAATGGTTTCATAATATTTATAATCTCATTACAAACTACAtt  <  1:175097/100‑1 (MQ=255)

GTCTTAAAAGTCCATTTGCATTTTCAATAGAACCACGTTGATATGGACAACCCAAATCACTAAAATAAATACTACAATTCAATTCATCTTCTATTTCTTCAAATAGAGCAAACTCCTTACCTCTATCCATAGTTATACTTTTGGGTAATAATGGTTTCATAATATTTATAATCTCATTACAAACTACATT  >  NC_007793/1631136‑1631325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`