Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_007793 1,600,852 C→T V158M (GTG→ATG)  SAUSA300_RS07900 ← tyrosine recombinase XerD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077931,600,8520CT100.0% 832.8 / NA 289V158M (GTG→ATG) SAUSA300_RS07900tyrosine recombinase XerD
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (3/286);  total (3/286)

Only 100 of 290 total aligned reads displayed.

TAAGTAGTTAAGTACTCAATGACTGCGTCGCCTAATGGTACAATTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCACGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTACAGAAGTTCTAACATCGTACGATCACGATATCCATTAATTTT  >  NC_007793/1600755‑1600945
                                                                                                 |                                                                                             
      gtTAAGTACTCAATGACTGCGTCGCCTAATGGTACAATTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTa                                                                                       <  1:2685811/100‑1 (MQ=255)
                    atcTGCGTCGCCTAATGGTACAATTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATc                                                                         <  1:709725/98‑1 (MQ=255)
                    atcTGCGTCGCCTAATGGTACAATTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATc                                                                         <  1:1550474/98‑1 (MQ=255)
                    atcTGCGTC‑CCTAATGGTACAATTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCa                                                                        <  1:3139944/98‑1 (MQ=255)
                    atcTGCGGCACCTAATGGTACAATTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATc                                                                         <  1:1081857/98‑1 (MQ=255)
                     aCTGCGTCGCCTAATGGTACAATTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCa                                                                        <  1:2307633/100‑1 (MQ=255)
                      cTGCGTCGCCTAATGGTACAATTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTAGCac                                                                       <  1:645281/100‑2 (MQ=255)
                         tgTCGCCTAATGGTACAATTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTc                                                                    <  1:3745944/99‑1 (MQ=255)
                         tgTCGCCTAATGGTACAATTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTc                                                                    <  1:4736283/99‑1 (MQ=255)
                         tccgatcTAATGGTACAATTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTc                                                                    <  1:5530566/94‑1 (MQ=255)
                         cGTCGCCTAATGGTACAATTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTc                                                                    <  1:1381748/100‑1 (MQ=255)
                         cGTCGCCTAATGGTACAATTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTc                                                                    <  1:5301238/100‑1 (MQ=255)
                         cGTCGCCTAATGGTACAATTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTc                                                                    <  1:1715106/100‑1 (MQ=255)
                         cGTCGCCTAATGGTACAATTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTc                                                                    <  1:305132/100‑1 (MQ=255)
                         cGTCGCCTAATGGTACAATTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCCAAATGTATCAATTc                                                                    <  1:2703235/100‑1 (MQ=255)
                           tCGCCTAATGGTACAATTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAg                                                                  <  1:2039513/100‑1 (MQ=255)
                                      tACAATTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCAtt                                                       <  1:4009099/100‑1 (MQ=255)
                                       aCAATTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCAttg                                                      <  1:3821845/100‑2 (MQ=255)
                                         aaTTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTccc                                                    <  1:1172382/100‑1 (MQ=255)
                                          aTTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTccca                                                   <  1:1258859/100‑2 (MQ=255)
                                          aTTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCg                                                   <  1:3342890/100‑1 (MQ=255)
                                          aTTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCg                                                   <  1:1582151/100‑1 (MQ=255)
                                          aTTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCg                                                   <  1:3521670/100‑1 (MQ=255)
                                           ttctttctTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTcccat                                                  <  1:5185845/100‑3 (MQ=255)
                                           ttctttctTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGt                                                  <  1:445812/100‑1 (MQ=255)
                                           ttctttctTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGt                                                  <  1:2485408/100‑1 (MQ=255)
                                           ttctttctTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCAGTCCCGt                                                  <  1:2926506/100‑1 (MQ=255)
                                           cttccgatctATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGt                                                  <  1:5135004/91‑1 (MQ=255)
                                            tctttcttTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGtt                                                 <  1:5507472/100‑1 (MQ=255)
                                            tctttcttTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGtt                                                 <  1:2842001/100‑1 (MQ=255)
                                            tctttcttTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGtt                                                 <  1:1606483/100‑1 (MQ=255)
                                             ctttctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGttt                                                <  1:1038845/100‑2 (MQ=255)
                                             ctttctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGttt                                                <  1:2047087/100‑2 (MQ=255)
                                             ctttctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTg                                                <  1:604752/100‑1 (MQ=255)
                                             ctttctttATCGCC‑‑TCCCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGcc                                              <  1:1694250/100‑2 (MQ=255)
                                              tttctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGtcgt                                               <  1:5285979/100‑4 (MQ=255)
                                              tttctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGc                                               <  1:5723070/100‑1 (MQ=255)
                                              tttctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGc                                               <  1:1011425/100‑1 (MQ=255)
                                              tttctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGc                                               <  1:3362692/100‑1 (MQ=255)
                                              tttctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGc                                               <  1:4113111/100‑1 (MQ=255)
                                              tccgatcttCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGttca                                               <  1:5381012/92‑3 (MQ=255)
                                               ttctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGct                                              <  1:1330397/100‑2 (MQ=255)
                                               ttctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCg                                              <  1:4200840/100‑1 (MQ=255)
                                               ttctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCg                                              <  1:3558488/100‑1 (MQ=255)
                                                tctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGcaa                                             <  1:1741615/100‑3 (MQ=255)
                                                tctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGt                                             <  1:4254995/100‑1 (MQ=255)
                                                tctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGt                                             <  1:761157/100‑1 (MQ=255)
                                                tctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGt                                             <  1:5763983/100‑1 (MQ=255)
                                                tctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGt                                             <  1:4645327/100‑1 (MQ=255)
                                                tctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGt                                             <  1:5389459/100‑1 (MQ=255)
                                                tctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGt                                             <  1:3782959/100‑1 (MQ=255)
                                                tctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGt                                             <  1:947392/100‑1 (MQ=255)
                                                tctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGt                                             <  1:3723264/100‑1 (MQ=255)
                                                tctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGt                                             <  1:1906098/100‑1 (MQ=255)
                                                tctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGt                                             <  1:1804271/100‑1 (MQ=255)
                                                tctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGt                                             <  1:3254995/100‑1 (MQ=255)
                                                tctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGt                                             <  1:3703655/100‑1 (MQ=255)
                                                gatctATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGt                                             <  1:1975445/96‑1 (MQ=255)
                                                ctcttccgatcTTTACCGAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGt                                             <  1:1475/90‑1 (MQ=255)
                                                ctcttccgatcTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGt                                             <  1:5487629/90‑1 (MQ=255)
                                                cgatcttCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGt                                             <  1:5565020/94‑1 (MQ=255)
                                                 ctttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTa                                            <  1:2238456/100‑1 (MQ=255)
                                                 ctttATCGCCCTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTa                                            <  1:4337500/100‑1 (MQ=255)
                                                  tttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGccatt                                           <  1:4947276/100‑5 (MQ=255)
                                                  tttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGTGTAc                                           <  1:1650352/100‑1 (MQ=255)
                                                  tttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTAc                                           <  1:4624184/100‑1 (MQ=255)
                                                  tttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTAc                                           <  1:5418162/100‑1 (MQ=255)
                                                  tttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTAc                                           <  1:5497244/100‑1 (MQ=255)
                                                  tttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTAc                                           <  1:2638153/100‑1 (MQ=255)
                                                  tttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTAc                                           <  1:212736/100‑1 (MQ=255)
                                                  tttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTAc                                           <  1:5008119/100‑1 (MQ=255)
                                                  tttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTAc                                           <  1:288402/100‑1 (MQ=255)
                                                  tttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTAc                                           <  1:825206/100‑1 (MQ=255)
                                                  tttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTAc                                           <  1:442128/100‑1 (MQ=255)
                                                  tttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTAc                                           <  1:4315398/100‑1 (MQ=255)
                                                  tttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTAc                                           <  1:1467168/100‑1 (MQ=255)
                                                  tttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTAc                                           <  1:4135878/100‑1 (MQ=255)
                                                  tttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTAc                                           <  1:3980446/100‑1 (MQ=255)
                                                  tttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATCCCCGTTGCGTAc                                           <  1:5583857/100‑1 (MQ=255)
                                                  tttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAACGTATCAATTCAGATACACGCATTCCCGTTGCGTAc                                           <  1:3169795/100‑1 (MQ=255)
                                                  gatctCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTAc                                           <  1:5370725/96‑1 (MQ=255)
                                                  gatctCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTAc                                           <  1:4041618/96‑1 (MQ=255)
                                                  cttccgatcTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTAc                                           <  1:3766987/92‑1 (MQ=255)
                                                   ttATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTAct                                          <  1:891464/100‑2 (MQ=255)
                                                    tATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAGCTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTACAg                                         <  1:2772059/100‑1 (MQ=255)
                                                    tATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTACAg                                         <  1:3928199/100‑1 (MQ=255)
                                                    tATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACACATTCCCGTTGCGTACAg                                         <  1:2398322/100‑1 (MQ=255)
                                                     ctCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTACAGa                                        <  1:5670440/99‑1 (MQ=255)
                                                     aTCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTACAGa                                        <  1:2533615/100‑1 (MQ=255)
                                                     aTCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTACAGa                                        <  1:3604638/100‑1 (MQ=255)
                                                     aTCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTACAGa                                        <  1:3413738/100‑1 (MQ=255)
                                                           tttACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTTAATGTATCAATTCAGATACACGCATTCCCGTTGCGTACAGAAGTTCt                                  <  1:2985045/100‑1 (MQ=255)
                                                            ttACCAAATACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTACAGAAGTTCTa                                 <  1:3291256/100‑1 (MQ=255)
                                                                   aTACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTACAGAAGTTCTAACATcca                          <  1:4564798/100‑3 (MQ=255)
                                                                   aTACGCGTACAAATCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTACAGAAGTTCTAACATCGt                          <  1:2543386/100‑1 (MQ=255)
                                                                              aaTCCCATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTACAGAAGTTCTAACATCGTACGATCACGat               <  1:1775241/100‑1 (MQ=255)
                                                                                  ccATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGGTACACGCATTCCCGTTGCGTACAGAAGTTCTAACATCGTACGATCACGATATcc           <  1:4827789/100‑1 (MQ=255)
                                                                                  ccATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTACAGAAGTTCTAACATCGTACGATCACGATATcc           <  1:3031197/100‑1 (MQ=255)
                                                                                   cATTATTAAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTACAGAAGTTCTAACATCGTACGATCACGATATCCa          <  1:2200436/100‑1 (MQ=255)
                                                                                     ttattaAGTTCATGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTACAGAAGTTCTAACATCGTACGATCACGATATCCagc        <  1:5060516/100‑3 (MQ=255)
                                                                                                 |                                                                                             
TAAGTAGTTAAGTACTCAATGACTGCGTCGCCTAATGGTACAATTCTTTCTTTATCGCCTTTACCAAATACGCGTACAAATCCCATTATTAAGTTCACGTTTTCTAACTCTAAATGTATCAATTCAGATACACGCATTCCCGTTGCGTACAGAAGTTCTAACATCGTACGATCACGATATCCATTAATTTT  >  NC_007793/1600755‑1600945

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑