D66 :: BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	1,453,835	T→C	T178A (ACT→GCT)	SAUSA300_RS07200 ←	virulence factor C

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	1,453,835	0	T	C	100.0%	566.1 / NA	197	T178A (ACT→GCT)	SAUSA300_RS07200	virulence factor C
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (7/190); total (7/190)

Only 100 of 200 total aligned reads displayed.

AAGAGACATGTCGATAGAAATGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGTTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGATTTCCTAAATCTAGCCATTTACGCATAAAAACAATATTGTCAT  >  NC_007793/1453739‑1453930

aaGAGACATGTCGATAGAAATGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCCATACGGGTAACTGTGATTCTGGATAGGTAGCTAg                                                                                              <  1:5119438/100‑1 (MQ=255)

aaGAGACATGTCGATAGAAATGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAg                                                                                              <  1:5195209/100‑1 (MQ=255)

     ttaTGTCGATAGAAATGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCActt                                                                                         >  1:3690816/3‑100 (MQ=255)

     aCATGTCGATAGAAATGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGCGATTCTGGATAGGTAGCTAGCaagc                                                                                         <  1:3350455/100‑4 (MQ=255)

          tCGATAGAAATGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTtcttct                                                                                    <  1:2598253/100‑1 (MQ=255)

          tCGATAGAAATGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTtcttct                                                                                    <  1:2778488/100‑1 (MQ=255)

          tCGATAGAAATGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTtcttct                                                                                    <  1:2838927/100‑1 (MQ=255)

          tCGATAGAAATGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTtcttct                                                                                    <  1:3481404/100‑1 (MQ=255)

          tCGATAGAAATGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTtcttct                                                                                    <  1:4330353/100‑1 (MQ=255)

          tCGATAGAAATGATAATTATTAGTAGCGTGATTTTCTTCTAAAGCATGTTTTTCCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTtcttct                                                                                    <  1:2437731/100‑1 (MQ=255)

             aTAGAAATGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAgg                                                                                 <  1:5592050/100‑1 (MQ=255)

             aTAGAAATGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAgg                                                                                 <  1:1251426/100‑1 (MQ=255)

             aTAGAAATGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAgg                                                                                 <  1:1205260/100‑1 (MQ=255)

             aTAGAAATGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAgg                                                                                 <  1:2605369/100‑1 (MQ=255)

              tAGAAATGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAggg                                                                                <  1:1682353/100‑2 (MQ=255)

               aGAAATGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTCCCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAggca                                                                               <  1:5127513/100‑3 (MQ=255)

               aGAAATGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGac                                                                               <  1:3010150/100‑1 (MQ=255)

               aGAAATGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGac                                                                               <  1:18574/100‑1 (MQ=255)

               aGAAATGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGac                                                                               <  1:1165961/100‑1 (MQ=255)

                gAAATGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGaca                                                                              <  1:3629132/100‑1 (MQ=255)

                 aaaTGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGacaa                                                                             <  1:416038/100‑2 (MQ=255)

                  aaTGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACAcc                                                                            <  1:850873/100‑1 (MQ=255)

                  aaTGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACAcc                                                                            <  1:24664/100‑1 (MQ=255)

                  aaTGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACAcc                                                                            <  1:2694203/100‑1 (MQ=255)

                  aaTGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACAcc                                                                            <  1:2755450/100‑1 (MQ=255)

                  aaTGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACAcc                                                                            <  1:3733368/100‑1 (MQ=255)

                  aaTGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACAcc                                                                            <  1:3418596/100‑1 (MQ=255)

                  aaTGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACAcc                                                                            <  1:5519780/100‑1 (MQ=255)

                  aaTGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACAcc                                                                            <  1:1542015/100‑1 (MQ=255)

                  aaTGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACAcc                                                                            <  1:5236969/100‑1 (MQ=255)

                   aTGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACAcca                                                                           <  1:4568923/100‑1 (MQ=255)

                    tGATAATTATTCGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACAccat                                                                          <  1:1734126/100‑1 (MQ=255)

                      aTAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACAccatgc                                                                        <  1:3715454/100‑3 (MQ=255)

                        aaTTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACAccagcgag                                                                      <  1:4026060/100‑6 (MQ=255)

                         attattAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCAtt                                                                     <  1:44998/100‑1 (MQ=255)

                         attattAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCAtt                                                                     <  1:3153170/100‑1 (MQ=255)

                           tattaGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCGCTTCTTCTAGGACACCATCCATTAc                                                                   <  1:1259327/100‑1 (MQ=255)

                            attaGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTAct                                                                  <  1:2164479/100‑1 (MQ=255)

                              taGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTActtg                                                                <  1:1302582/100‑2 (MQ=255)

                              taGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTActgt                                                                <  1:2953235/100‑3 (MQ=255)

                                gTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTActtctt                                                              <  1:1953539/100‑1 (MQ=255)

                                 ttGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTg                                                             <  1:1796701/100‑1 (MQ=255)

                                 ttGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTg                                                             <  1:2377535/100‑1 (MQ=255)

                                 ttGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTg                                                             <  1:3005188/100‑1 (MQ=255)

                                 ttGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTg                                                             <  1:3900387/100‑1 (MQ=255)

                                 ttGCGTGATTCTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTg                                                             <  1:4845865/100‑1 (MQ=255)

                                  tGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGa                                                            <  1:5416911/100‑1 (MQ=255)

                                    cGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAat                                                          <  1:4279103/100‑1 (MQ=255)

                                    cGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAat                                                          <  1:3117432/100‑1 (MQ=255)

                                     gTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAata                                                         <  1:4368016/100‑1 (MQ=255)

                                              ttctAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAg                                                <  1:5472865/100‑1 (MQ=255)

                                              ttctAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAg                                                <  1:2318304/100‑1 (MQ=255)

                                              ttctAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAg                                                <  1:2477783/100‑1 (MQ=255)

                                              ttctAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAg                                                <  1:642613/100‑1 (MQ=255)

                                              cagatctgCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAg                                                <  1:1367213/93‑1 (MQ=255)

                                              atctAAAGCGTGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAg                                                <  1:983346/99‑1 (MQ=255)

                                                ctAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCg                                              <  1:496798/100‑1 (MQ=255)

                                                ctAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCg                                              <  1:5690353/100‑1 (MQ=255)

                                                ctAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCg                                              <  1:227535/100‑1 (MQ=255)

                                                ctAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCg                                              <  1:205712/100‑1 (MQ=255)

                                                ctAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCg                                              <  1:4172289/100‑1 (MQ=255)

                                                ctAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCg                                              <  1:1534623/100‑1 (MQ=255)

                                                ctAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCg                                              <  1:32418/100‑1 (MQ=255)

                                                 tAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCgg                                             <  1:5002482/100‑2 (MQ=255)

                                                 tAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGa                                             >  1:1090850/1‑100 (MQ=255)

                                                  aaaGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGag                                            <  1:5260513/100‑2 (MQ=255)

                                                  aaaGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGag                                            <  1:3506316/100‑2 (MQ=255)

                                                  aaaGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGag                                            <  1:2364489/100‑2 (MQ=255)

                                                  aaaGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGaa                                            <  1:3449498/100‑2 (MQ=255)

                                                  aaaGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGAt                                            <  1:5435382/100‑1 (MQ=255)

                                                  aaaGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGAt                                            <  1:1423359/100‑1 (MQ=255)

                                                  aaaGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGAt                                            <  1:592406/100‑1 (MQ=255)

                                                  aaaGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGAt                                            <  1:1027358/100‑1 (MQ=255)

                                                  aaaGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGAt                                            <  1:235693/100‑1 (MQ=255)

                                                  aaaGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGAt                                            <  1:4071528/100‑1 (MQ=255)

                                                   ttccgatctttACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGAtt                                           <  1:3758460/92‑1 (MQ=255)

                                                   aaGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGAtc                                           <  1:2079776/100‑2 (MQ=255)

                                                    aGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCgcaaa                                          <  1:2852161/100‑5 (MQ=255)

                                                    aGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGAttt                                          <  1:3844726/100‑1 (MQ=255)

                                                    aGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGAttg                                          <  1:716204/100‑2 (MQ=255)

                                                    aGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGAtta                                          <  1:175328/100‑2 (MQ=255)

                                                    aGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGAtgt                                          <  1:1112971/100‑3 (MQ=255)

                                                          ttttACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGATTTCCtcac                                    <  1:5160264/100‑4 (MQ=255)

                                                             tACCAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACTCCATCCATTGCTTCTTGAATATTTCCATAGCGATTTCCTAAATCt                                 <  1:4939506/100‑1 (MQ=255)

                                                               ccAATACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGATTTCCTAAATCTAg                               <  1:5790259/100‑1 (MQ=255)

                                                                 aaTACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGATTTCCTAAATCTAGcc                             <  1:2528503/100‑1 (MQ=255)

                                                                  aTACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGATTTCCTAAATCTAGCCa                            <  1:4822569/100‑1 (MQ=255)

                                                                   tACGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGATTTCCTAAATCTAGCCaa                           <  1:3607674/100‑2 (MQ=255)

                                                                     cGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGATTTCCTAAATCTAGCCAttt                         <  1:1567497/100‑1 (MQ=255)

                                                                     cGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGATTTCCTAAATCTAGCCAttt                         <  1:4616085/100‑1 (MQ=255)

                                                                     cGGGTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGATTTCCTAAATCTAGCCAttt                         <  1:4736580/100‑1 (MQ=255)

                                                                        gTAACTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGATTTCCTAAATCTAGCCacacaca                      <  1:1924480/100‑7 (MQ=255)

                                                                          aaCTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGATTTCCTAAATCTAGCCATTTACGCa                    >  1:2986759/1‑100 (MQ=255)

                                                                            cTGTGATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGATTTCCTAAATCTAGCCATTTACGCATa                  <  1:4662146/100‑1 (MQ=255)

                                                                             tgtgATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGATTTCCTAAATCTAGCCATTTACGCATaa                 <  1:3984641/100‑1 (MQ=255)

                                                                               tgATTCTGGATAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGATTTCCTAAATCTAGCCATTTACGCATaaaa               <  1:5535371/100‑1 (MQ=255)

                                                                                        aTAGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGATTTCCGAAATCTAGCCATTTACGCATAAAAACAatgtac      <  1:3527833/100‑5 (MQ=255)

                                                                                          aGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGATTTCCTAAATCTAGCCATTTACGCATAAAAACAATATTGTc    <  1:4084532/100‑1 (MQ=255)

                                                                                          aGGTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGATTTCCTAAATCTAGCCATTTACGCATAAAAACAATATTGTc    <  1:2404652/100‑1 (MQ=255)

                                                                                            gTAGCTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGATTTCCTAAATCTAGCCATTTACGCATAAAAACAATATTGTCAt  <  1:5602873/100‑1 (MQ=255)

AAGAGACATGTCGATAGAAATGATAATTATTAGTTGCGTGATTTTCTTCTAAAGCATGTTTTACCAATACGGGTAACTGTGATTCTGGATAGGTAGTTAGCACTTCTTCTAGGACACCATCCATTACTTCTTGAATATTTCCATAGCGATTTCCTAAATCTAGCCATTTACGCATAAAAACAATATTGTCAT  >  NC_007793/1453739‑1453930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`