| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 1,154,556 | A→G | intergenic (+359/‑195) | SAUSA300_RS05695 → / → SAUSA300_RS05700 | fibrinogen‑binding protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 1,154,556 | 0 | A | G | 90.0% | 96.5 / 1.1 | 50 | intergenic (+359/‑195) | SAUSA300_RS05695/SAUSA300_RS05700 | fibrinogen‑binding protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (1/4); new base G (3/42); total (4/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.53e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
TGGTAGTAGTTGACTAAATGAAAATAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGG > NC_007793/1154461‑1154652 | tGGTAGTAGTTGACTAAATGAAAATAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAacagacaa > 1:3069996/1‑100 (MQ=255) gtagtaGTTGACTAAATGAAAATAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAacagacaagg < 1:192725/100‑3 (MQ=255) gtagtaGTTGACTAAATGAAAATAAGCTTATAACAAG‑TTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGc < 1:4047403/100‑1 (MQ=255) tagtagTTGACTAAATGAAAATAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGc < 1:1910578/100‑1 (MQ=255) tagtagTTGACTAAATGAAAATAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGc < 1:166538/100‑1 (MQ=255) agtagtTGACTAAATGAAAATAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCa < 1:1402796/100‑1 (MQ=255) agtagtTGACTAAATGAAAATAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCa < 1:4292561/100‑1 (MQ=255) agtagtTGACTAAATGAAAATAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCa < 1:5360689/100‑1 (MQ=255) agtagtTGACTAAATGAAAATAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCa < 1:212037/100‑1 (MQ=255) agtagtTGACTAAATGAAAATAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCa < 1:3720392/100‑1 (MQ=255) agtagtTGACTAAATGAAAATAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCa < 1:3231187/100‑1 (MQ=255) agtagtTGACTAAATGAAAATAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCa < 1:943693/100‑1 (MQ=255) tagtTGACTAAATGAAAATAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCGCCAATTCCAACAGACAATGcctg < 1:3657672/100‑4 (MQ=255) tagtTGACTAAATGAAAATAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAg < 1:8700/100‑1 (MQ=255) tagtTGACTAAATGAAAATAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAg < 1:3877588/100‑1 (MQ=255) agtTGACTAAATGAAAATAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACGATGCAAGt < 1:4639412/100‑1 (MQ=255) agtTGACTAAATGAAAATAAGCTTATAACAAGTTTTTTCAATACGCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGt < 1:3798002/100‑1 (MQ=255) gtTGACTAAATGAAAATAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGtg < 1:3149732/100‑2 (MQ=255) gACTATATGAAAATAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGc > 1:1817778/1‑100 (MQ=255) tAAATGAAAATAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGCggg < 1:1184299/100‑1 (MQ=255) aaaTGAAAATAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGCgggg < 1:5235081/100‑1 (MQ=255) aaTAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCaac < 1:1551713/100‑2 (MQ=255) ctAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCaaca > 1:4566402/2‑98 (MQ=25) tAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCaacag < 1:4622522/100‑4 (MQ=25) aGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCaacagag < 1:962110/100‑6 (MQ=25) aGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCaacagag < 1:3538035/100‑6 (MQ=25) aGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCaacagag < 1:520719/100‑6 (MQ=25) aGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCaacagag < 1:164015/100‑6 (MQ=25) aGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCaacagag < 1:4820370/100‑6 (MQ=25) cTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATAACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagag < 1:4625926/100‑2 (MQ=21) cTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAAAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagag < 1:4165763/100‑2 (MQ=21) tataACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagagaa < 1:2025911/100‑4 (MQ=21) taACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagagaaat < 1:4834307/100‑6 (MQ=21) taACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagagaaat < 1:1155660/100‑6 (MQ=21) aaCAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGTTCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagagaaata < 1:1285760/100‑7 (MQ=21) cAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGGGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagagaaatagg < 1:1256871/100‑9 (MQ=21) cAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagagaaatagg < 1:3771437/100‑9 (MQ=21) cAAGTTTTTTCAATACTCGTGGGGACACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagagaaatagg < 1:3060780/100‑9 (MQ=21) aGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagagaaataggat < 1:1303225/100‑11 (MQ=18) aGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAGACAATGCAAGTTGGC‑GGGGCCCCAACAgagagaaataggag < 1:4618377/100‑11 (MQ=18) gcaagttggcggggCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGGCAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAg > 1:555075/11‑100 (MQ=11) gcaagttggcggggCCCCAACAGAGAGAAATAGGATCACCAATTCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAg > 1:3381702/11‑100 (MQ=21) ccccaacaGAGAGAAATAGGATCACCAATTCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAAtgtg < 1:3931335/97‑1 (MQ=255) cccaacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGc < 1:675480/98‑1 (MQ=14) cccaacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGc < 1:2848739/98‑1 (MQ=14) ccaacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCa < 1:5627034/99‑1 (MQ=14) caacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCaa < 1:4997485/100‑1 (MQ=14) caGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGtt < 1:3223045/100‑1 (MQ=14) aaaTAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCgggg < 1:957319/100‑1 (MQ=14) ccAATTCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATag < 1:2001943/100‑1 (MQ=255) ccAATTCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATag < 1:3781607/100‑1 (MQ=255) ccAAGTCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATag < 1:5152859/100‑1 (MQ=255) acagacaaTGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAgg < 1:2430767/100‑1 (MQ=11) acagacaaTGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAgg < 1:282221/100‑1 (MQ=11) acaaacaaTGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAAATAgg < 1:2142470/100‑1 (MQ=255) | TGGTAGTAGTTGACTAAATGAAAATAAGCTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGG > NC_007793/1154461‑1154652 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |