Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_007793 1,142,139 T→A G30G (GGT→GGA)  SAUSA300_RS05620 → thiol reductase thioredoxin

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077931,142,1390TA99.4% 2935.8 / ‑2.2 1014G30G (GGT→GGA) SAUSA300_RS05620thiol reductase thioredoxin
Reads supporting (aligned to +/- strand):  ref base T (6/0);  new base A (1000/7);  total (1007/7)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1015 total aligned reads displayed.

TGGCATTTATGGCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGTCCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGTTGATGAAAATCCATCAACT  >  NC_007793/1142042‑1142238
                                                                                                 |                                                                                                   
tGGCATTTATGGCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGAcc                                                                                                   >  1:4108288/1‑100 (MQ=255)
tGGCATTTATGGCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGAcc                                                                                                   >  1:3917738/1‑100 (MQ=255)
tGGCATTTATGGCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGAcc                                                                                                   >  1:908013/1‑100 (MQ=255)
tGGCATTTATGGCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGAcc                                                                                                   >  1:4308237/1‑100 (MQ=255)
tGGCATTTATGGCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGAcc                                                                                                   >  1:4605635/1‑100 (MQ=255)
tGGCATTTATGGCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGAcc                                                                                                   >  1:1462171/1‑100 (MQ=255)
tGGCATTTATGGCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGAcc                                                                                                   >  1:5709579/1‑100 (MQ=255)
tGGCATTTATGGCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGAcc                                                                                                   >  1:167668/1‑100 (MQ=255)
 ggCATTTATGGCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCa                                                                                                  >  1:2565886/1‑100 (MQ=255)
 ggCATTTATGGCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCa                                                                                                  >  1:3693193/1‑100 (MQ=255)
 ggCATTTATGGCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCa                                                                                                  >  1:1957532/1‑100 (MQ=255)
 ggCATTTATGGCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCa                                                                                                  >  1:184665/1‑100 (MQ=255)
      ttATGGCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTaa                                                                                             >  1:1322873/1‑100 (MQ=255)
      ctctGGCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTaa                                                                                             >  1:4948521/4‑100 (MQ=255)
        aTGGCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTaaaa                                                                                           >  1:2456024/1‑100 (MQ=255)
        aTGGCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTaaaa                                                                                           >  1:2129338/1‑100 (MQ=255)
        aTGGCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTaaaa                                                                                           >  1:2883960/1‑100 (MQ=255)
         tGGCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAAt                                                                                          >  1:4688815/1‑100 (MQ=255)
          ggCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATg                                                                                         >  1:3147278/1‑100 (MQ=255)
          ggCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATg                                                                                         >  1:4368583/1‑100 (MQ=255)
          ggCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATg                                                                                         >  1:2964626/1‑100 (MQ=255)
              cccGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCg                                                                                     >  1:421090/3‑100 (MQ=255)
                  tAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTcc                                                                                 >  1:283114/1‑100 (MQ=255)
                     taGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGt                                                                              >  1:1096195/2‑100 (MQ=255)
                     aaGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGt                                                                              >  1:876229/1‑100 (MQ=255)
                      aGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTccagat                                                                             >  1:342191/1‑96 (MQ=255)
                         gccAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTa                                                                          >  1:2019387/3‑100 (MQ=255)
                         aaCAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTaaga                                                                          >  1:5487647/1‑97 (MQ=255)
                           taGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTaga                                                                        >  1:3316681/2‑100 (MQ=255)
                                    aTTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTagc                                                               <  1:4785478/100‑1 (MQ=255)
                                              taaaGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTAt                                                     >  1:447659/2‑100 (MQ=255)
                                              aaaaGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTAt                                                     >  1:5006753/1‑100 (MQ=255)
                                              aaaaGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTAt                                                     >  1:2440276/1‑100 (MQ=255)
                                                 aGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGaa                                                  >  1:308092/1‑100 (MQ=255)
                                                 aGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGaa                                                  >  1:2698975/1‑100 (MQ=255)
                                                    aGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGt                                               >  1:5323711/1‑100 (MQ=255)
                                                    aGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGt                                               >  1:2067619/1‑100 (MQ=255)
                                                        tCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAg                                           >  1:433995/1‑100 (MQ=255)
                                                        ccTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAg                                           >  1:2212525/2‑100 (MQ=255)
                                                         cTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGc                                          >  1:3267534/1‑100 (MQ=255)
                                                         cTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGc                                          >  1:56349/1‑100 (MQ=255)
                                                           ggTGTACAACTAGTAGCTTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTg                                        >  1:5527239/1‑100 (MQ=255)
                                                           ggTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGTTCCGGCATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTg                                        >  1:828364/1‑100 (MQ=255)
                                                           ggTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTg                                        >  1:1266928/1‑100 (MQ=255)
                                                           ggTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTg                                        >  1:4284650/1‑100 (MQ=255)
                                                           ggTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTg                                        >  1:4243967/1‑100 (MQ=255)
                                                           ggTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTg                                        >  1:377432/1‑100 (MQ=255)
                                                           ggTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTg                                        >  1:954334/1‑100 (MQ=255)
                                                           ggTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTg                                        >  1:5292013/1‑100 (MQ=255)
                                                             tgtACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGAc                                      >  1:2761468/1‑100 (MQ=255)
                                                              gtACAACTATTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACa                                     >  1:3885450/1‑100 (MQ=255)
                                                              gtACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACa                                     >  1:4559573/1‑100 (MQ=255)
                                                              gtACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACa                                     >  1:1001854/1‑100 (MQ=255)
                                                              gtACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACa                                     >  1:1168755/1‑100 (MQ=255)
                                                              gtACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACa                                     >  1:3811383/1‑100 (MQ=255)
                                                              gtACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACa                                     >  1:3854345/1‑100 (MQ=255)
                                                              gtACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACa                                     >  1:2176684/1‑100 (MQ=255)
                                                              gtACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACa                                     >  1:3964714/1‑100 (MQ=255)
                                                              gtACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACa                                     >  1:5373686/1‑100 (MQ=255)
                                                              gtACAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACa                                     >  1:556898/1‑100 (MQ=255)
                                                                aCAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCCGCTGACTATGAAGGTAAAGCTGACAtt                                   >  1:3634301/1‑100 (MQ=255)
                                                                aCAACTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACAtt                                   >  1:646085/1‑100 (MQ=255)
                                                                  tgcTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACAtttt                                 >  1:2927983/3‑100 (MQ=255)
                                                                   ccTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTa                                >  1:1224990/2‑100 (MQ=255)
                                                                   ccTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTa                                >  1:348002/2‑100 (MQ=255)
                                                                   aCTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTa                                >  1:1803216/1‑100 (MQ=255)
                                                                   aCTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTa                                >  1:3533264/1‑100 (MQ=255)
                                                                    cTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTaa                               >  1:4728790/1‑100 (MQ=255)
                                                                    cTAGTAGATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTaa                               >  1:4917875/1‑100 (MQ=255)
                                                                      agtagATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTaaaa                             >  1:173589/1‑100 (MQ=255)
                                                                      agtagATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTaaaa                             >  1:5120429/1‑100 (MQ=255)
                                                                      agtagATTTTTGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTaaaa                             >  1:156624/1‑100 (MQ=255)
                                                                             ttttGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATg                      >  1:2516153/1‑100 (MQ=255)
                                                                             ctttGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATg                      >  1:338194/2‑100 (MQ=255)
                                                                              tctGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGGAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGt                     >  1:2366090/3‑100 (MQ=255)
                                                                              tctGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGt                     >  1:4635040/3‑100 (MQ=255)
                                                                              cttGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGt                     >  1:4162168/2‑100 (MQ=255)
                                                                              cttGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGt                     >  1:5792443/2‑100 (MQ=255)
                                                                              cctGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGt                     >  1:1605075/3‑100 (MQ=255)
                                                                               ttGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGtt                    >  1:5440480/1‑100 (MQ=255)
                                                                               ttGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGtt                    >  1:4016080/1‑100 (MQ=255)
                                                                               ctGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGtt                    >  1:5251016/2‑100 (MQ=255)
                                                                               atGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGtt                    >  1:2648365/2‑100 (MQ=255)
                                                                                tGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAGGCTGACATTTTAAAATTAGATGTtg                   >  1:1403829/1‑100 (MQ=255)
                                                                                tGGGCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGTtg                   >  1:3217362/1‑100 (MQ=255)
                                                                                 gggCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGTtga                  >  1:5054491/1‑100 (MQ=255)
                                                                                 gggCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGTtga                  >  1:1925145/1‑100 (MQ=255)
                                                                                 gggCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGTtga                  >  1:4866797/1‑100 (MQ=255)
                                                                                 gggCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGTtga                  >  1:440888/1‑100 (MQ=255)
                                                                                 gggCAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAAAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGTtga                  >  1:3584717/1‑100 (MQ=255)
                                                                                    cAACATGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGTtgatga               >  1:2090903/1‑100 (MQ=255)
                                                                                       agtGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGTTGATGaaaa            >  1:3036532/3‑100 (MQ=255)
                                                                                        ttGGTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGTTGATGAAAAt           >  1:2255888/2‑100 (MQ=255)
                                                                                          ggTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGTTGATGAAAATcc         >  1:724761/1‑100 (MQ=255)
                                                                                          ggTGTGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGTTGATGAAAATcc         >  1:1072626/1‑100 (MQ=255)
                                                                                          ggTGGGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGAAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGTTGATGAAAATcc         >  1:1524435/1‑100 (MQ=255)
                                                                                           ttgtgGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGTTGATGAAAATCCa        >  1:1895526/2‑100 (MQ=255)
                                                                                           gtgtGGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGTTGATGAAAATcta        >  1:5187717/1‑98 (MQ=255)
                                                                                             gtgGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGTTGATGAAAATCCATc      >  1:2591053/1‑100 (MQ=255)
                                                                                             gtgGACCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGTTGATGAAAATCCATc      >  1:3731238/1‑100 (MQ=255)
                                                                                                 |                                                                                                   
TGGCATTTATGGCAATCGTAAAAGTAACAGATGCAGATTTTGATTCAAAAGTAGAATCTGGTGTACAACTAGTAGATTTTTGGGCAACATGGTGTGGTCCATGTAAAATGATCGCTCCGGTATTAGAAGAATTAGCAGCTGACTATGAAGGTAAAGCTGACATTTTAAAATTAGATGTTGATGAAAATCCATCAACT  >  NC_007793/1142042‑1142238

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑