| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 1,117,648 | A→G | F144S (TTC→TCC) | SAUSA300_RS05490 ← | glycerophosphoryl diester phosphodiesterase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 1,117,648 | 0 | A | G | 98.3% | 153.9 / ‑6.2 | 60 | F144S (TTC→TCC) | SAUSA300_RS05490 | glycerophosphoryl diester phosphodiesterase |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (2/57); total (2/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
AATTTGTGGTGCGATTGAGCCTTCATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGAAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGTTAGTCCATTGATATCTTTGAAGTGATAAGCTGCGTCTAATTTCTT > NC_007793/1117554‑1117733 | aaTTTGTGGTGCGATTGAGCCTTCATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGtt < 1:3013036/100‑1 (MQ=255) gtggtgCGATTGAGCCTTCATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGtat > 1:4639447/1‑100 (MQ=255) tccgatcTTCGTAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCtgtgtg < 1:3874107/94‑1 (MQ=255) ctGAGCCTTCATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCtgtgtg < 1:5113334/99‑1 (MQ=255) tGAGGCTTCATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCGGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCtgtgtgt < 1:2571757/100‑1 (MQ=255) ggCCTTCATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGc < 1:1029499/99‑1 (MQ=255) gatcTTTATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGc < 1:1247434/97‑1 (MQ=255) gatcTTCATGGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGc < 1:4018824/97‑1 (MQ=255) ctccTTCGTAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGc < 1:1734592/98‑1 (MQ=255) aGCCTTCATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGc < 1:195368/100‑1 (MQ=255) aGCCTTCATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGAAGGTTAGTATAGCTGTGTGTGc < 1:5731058/100‑1 (MQ=255) gCCTTCATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCa < 1:1672522/100‑1 (MQ=255) gcctCATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCag < 1:1031343/97‑2 (MQ=255) ccTTCATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCtgtgtgtggaa < 1:2639293/100‑4 (MQ=255) ccTTCATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCAt < 1:3073526/100‑1 (MQ=255) ttccATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATg < 1:1984763/97‑1 (MQ=255) cTTCATAGGATTCAGGAGCATCTTTTAGGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATg < 1:5696273/100‑1 (MQ=255) cTTCATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCaga < 1:217874/100‑3 (MQ=255) cTTCATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATg < 1:5602925/100‑1 (MQ=255) cTTCATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATAGCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATg < 1:2484347/100‑1 (MQ=255) cTTCAGAGGAAGAAGGAGCATCTGTTAAGTCAACAGGTATAGACATATCAGGATATAGCATAAGCAACTCATCGGAGGTTAGTATAGCTGTGTGGGCATg < 1:611590/100‑1 (MQ=255) ttCATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCAtac < 1:2482627/100‑3 (MQ=255) ttCATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATgt < 1:302761/100‑2 (MQ=255) ttCATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATgc < 1:3318600/100‑2 (MQ=255) tgtAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGAcc > 1:2440545/3‑100 (MQ=255) cATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGAcc < 1:5734300/100‑1 (MQ=255) aTAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCa < 1:4470922/100‑1 (MQ=255) aGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACg < 1:2351390/100‑1 (MQ=255) gATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCaggga < 1:3927142/100‑5 (MQ=255) ttCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGatat < 1:1045852/100‑1 (MQ=255) ggAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGgtg < 1:3693936/100‑1 (MQ=255) gAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATggagc < 1:4374569/100‑4 (MQ=255) tgCATCGGTTAAGTCTATGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGtt < 1:3103653/99‑1 (MQ=255) aGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGtt < 1:1786091/100‑1 (MQ=255) aGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGtt < 1:963343/100‑1 (MQ=255) aGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGtt < 1:5515864/100‑1 (MQ=255) aGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGtt < 1:1115301/100‑1 (MQ=255) aGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGtt < 1:3710942/100‑1 (MQ=255) aGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGtt < 1:4365484/100‑1 (MQ=255) aGCATCTTTTAAATCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGtt < 1:4829696/100‑1 (MQ=255) gCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGgtgtcg < 1:3159638/100‑3 (MQ=255) gCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGttt < 1:5415050/100‑2 (MQ=255) gCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGTTa < 1:4445499/100‑1 (MQ=255) cTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGTTAGTcc < 1:2867367/100‑1 (MQ=255) ttAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGTTAGTCCAtt < 1:2652601/100‑1 (MQ=255) ttAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGTTAGTCCAtg < 1:3930614/100‑2 (MQ=255) tAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCGCGATATGGTGTTAGTCCATTg < 1:5768480/100‑1 (MQ=255) tAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGTTAGTCCATTg < 1:5200882/100‑1 (MQ=255) tAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGTTAGTCCATTg < 1:3745964/100‑1 (MQ=255) ccgatCTACGTCTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGCTAGTCCATTg < 1:4753749/96‑1 (MQ=255) tCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGTTAGTCCATTGatag < 1:762585/100‑2 (MQ=255) tttATATACATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGTTAGTCCATTGATATCTTTgg < 1:5775090/100‑2 (MQ=255) taCATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGTTAGTCCATTGATATCTTTGAAGTGAt < 1:554632/100‑1 (MQ=255) aCATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGTTAGTCCATTGATATCTTTGAAGTGAtg < 1:1234926/100‑2 (MQ=255) aCATATCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGTTAGTCCATTGATATCTTTGAAGTGATa < 1:3074123/100‑1 (MQ=255) atatCAGGATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGTTAGTCCATTGATATCTTTGAAGTGATGAg < 1:4614292/100‑1 (MQ=255) ggATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGTTAGTCCATTGATATCTTTGAAGTGATAAGCTGCgg < 1:5137560/100‑2 (MQ=255) ggATATTGCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGTTAGTCCATTGATATCTTTGAAGTGATAAGCTGCGt < 1:4715222/100‑1 (MQ=255) tctggCTTCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGTTAGTCCGTTGATATCTTTGAAGTGATAAGCTGCGTCTa < 1:4473868/96‑1 (MQ=255) tCAGCAACTCATCGGAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGTTAGTCCATTGATATCTTTGAAGTGATAAGCTGCGTCTAATTTCtt < 1:4314565/100‑1 (MQ=255) | AATTTGTGGTGCGATTGAGCCTTCATAGGATTCAGGAGCATCTTTTAAGTCTACGTTTATATACATATCAGGATATTGCTTCAGCAACTCATCGAAGGTTAGTATAGCTGTGTGTGCATGACCACGATATGGTGTTAGTCCATTGATATCTTTGAAGTGATAAGCTGCGTCTAATTTCTT > NC_007793/1117554‑1117733 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |