| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 979,291 | G→A | A366A (GCG→GCA) | SAUSA300_RS04805 → | peptide ABC transporter substrate‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 979,291 | 0 | G | A | 97.1% | 89.9 / ‑5.1 | 35 | A366A (GCG→GCA) | SAUSA300_RS04805 | peptide ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (25/9); total (26/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.98e-01 | |||||||||||
ACACTAACAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCGCACTGGGACAAAGCTAAAAAAGAGTTAGGTAAAAATGAAGTGACATTTTCAATGAACACAGAAGATACACCAGATGCAAAAATATCTGCTGAATATATC > NC_007793/979193‑979390 | acacTAACAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAtcgg > 1:1470020/1‑99 (MQ=255)acacTAACAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAtcgg > 1:1608224/1‑99 (MQ=255)acacTAACAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAtcgg > 1:4919018/1‑99 (MQ=255) acTAACAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAtcggaa > 1:5059046/1‑97 (MQ=255) acTAACAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCacac > 1:3920171/1‑100 (MQ=255) acTAACAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCacac > 1:3582637/1‑100 (MQ=255) acTAACAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCacac > 1:3430535/1‑100 (MQ=255) acTAACAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCacac > 1:1017566/1‑100 (MQ=255) acTAACAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCGCAc > 1:5783250/1‑100 (MQ=255) acTAACAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGACTATGCGAGTACCATAAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCacac > 1:3981932/1‑100 (MQ=255) atatcAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCACACt > 1:5349799/5‑100 (MQ=255) aaCAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTTAAGATCGAAGAGCacacgtc > 1:3047997/1‑97 (MQ=255) aaCAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCACACTgg > 1:3374648/1‑100 (MQ=255) aaCAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCACACTgg > 1:922951/1‑100 (MQ=255) aaCAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCACACTgg > 1:463696/1‑100 (MQ=255) aaCAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCACACTgg > 1:358076/1‑100 (MQ=255) aaCAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCACACTgg > 1:1314465/1‑100 (MQ=255) aaCAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCACACTgg > 1:1609771/1‑100 (MQ=255) aaCAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCACACTgg > 1:2068094/1‑100 (MQ=255) aaCAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCACACTgg > 1:3010514/1‑100 (MQ=255) aaCAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCACACTgg > 1:2087353/1‑100 (MQ=255) aaCAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCACACTgg > 1:2508211/1‑100 (MQ=255) aaCAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCCTTAAAATATAATCCTAAAGAAGCAAGAGCACACTgg > 1:5390543/1‑100 (MQ=255) aGCCAAAGGAATTGCGAAAGCGCCTAATGACAAAGATTATGCAAGTACCATGAATTCGCCTTTAAAAGATAATCCTAAAGAAGCAAGAGCAAACTGGGAc < 1:2501203/100‑1 (MQ=255) gCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCACACTGGGACa < 1:4170044/100‑1 (MQ=255) aTTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCACACTGGGACAAAGCTaaaa < 1:3402634/100‑1 (MQ=255) ttGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCACACTGGGACAAAGCTaaaaa < 1:5726701/100‑1 (MQ=255) aaGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCACACTGGGACAAAGCTAAAAAAGAGtt < 1:2497098/100‑1 (MQ=255) cgatcTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCACACTGGGACAAAGCTAAAAAAGAGTTaa < 1:2224810/96‑2 (MQ=255) tGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCACACTGGGACAAAGCTAAAAAAGAGTTAGGTAAAAAt > 1:1866825/1‑100 (MQ=255) ggCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCACACTGGGACAAAGCTAAAAAAGAGTTAGGTAAAAATg > 1:3124870/1‑100 (MQ=255) tATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCACACTGGGACAAAGCTAAAAAAGAGTTAGGTAAAAATGAAGTGACAt > 1:2395121/1‑100 (MQ=255) cGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCTAGAGCACACTGGGACAAAGCTAATAAAGAGTTAGGTAAAATTGAAGTAACAtttta > 1:3251001/1‑99 (MQ=255) gTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCACACTGGGACAAAGCTAAAAAAGAGTTAGGTAAAAATGAAGTGACATTTTCAAt > 1:193337/1‑100 (MQ=255) aCCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGTATACTGGGACAAAGCTAAAAAAGAGTTAGGTAAAAATGAAGTGACATTTTCAATGa > 1:5414695/1‑100 (MQ=255) aCCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCACACTGGGACAAAGCTAAAAAAGAGTTAGGTAAAAATGAAGTGACATTTTCAATGa > 1:5658536/1‑100 (MQ=255) tAAAATATAATCCTAAAGAAGCAAGAGCACACTGGGACAAAGCTAAAAAAGAGTTAGGTAAAAATGAAGTGACATTTTCAATGAACACAGAAGATACAcc < 1:4789740/100‑1 (MQ=255) tAAAATATAATCCTAAAGAAGCAAGAGCACACTGGGACAAAGCTAAAAAAGAGTTAGGTAAAAATGAAGTGACATTTTCAATGAACACAGAAGATACAcc < 1:5518902/100‑1 (MQ=255) tAAAATATAATCCTAAAGAAGCAAGAGCACACTGGGACAAAGCTAAAAAAGAGTTAGGTAAAAATGAAGTGACATTTTCAATGAACACAGAAGACACAcc < 1:2015499/100‑1 (MQ=255) aaTCCTAAAGAAGCAAGAGCACACTGGGACAAAGCTAAAAAAGAGTTAGGTAAAAATGAAGTGACATTTTCAATGAACACAGAAGATACACCAGAtcgga > 1:766222/1‑96 (MQ=255) tAAAGAAGCAAGAGCACACTGGGACAAAGCTAAAAAAGAGTTAGGTAAAAATGAAGTGACATTTTCAATGAACACAGAAGATACACCAGAtcggaagagc > 1:3198258/1‑91 (MQ=255) cgagCACACTGGGACAAAGCTAAAAAAGAGTTAGGTAAAAATGAAGTGACATTTTCAATGAACACAGAAGATACACCAGATGCAAAAATATCTGCTGAat > 1:3289986/2‑100 (MQ=255) agagCACACTGGGACAAAGCTAAAAAAGAGTTAGGTAAAAATGAAGTGACATTTTCAATGAACACAGAAGATACACCAGATGCAAAAATATCTGCTGAat > 1:3356239/1‑100 (MQ=255) gagCACACTGGGACAAAGCTAAAAAAGAGTTAGGTAAAAATGAAGTGACATTTTCAATGAACACAGAAGATACACCAGATGCAAAAATATCTGCTGAata > 1:4337474/1‑100 (MQ=255) agCACACTGGGACAAAGCTAAAAAAGAGTTAGGTAAAAATGAAGTGACATTTTCAATGAACACAGAAGATACACCAGATGCAAAAATATCTGCTGAatat > 1:2909644/1‑100 (MQ=255) gcACTGGGACAAAGCTAAAAAAGAGTTAGGTAAAAATGAAGTGACATTTTCAATGAACACAGAAGATACACCAGATGCAAAAATATCTGCTGAATATATc > 1:555815/1‑100 (MQ=255) gcACTGGGACAAAGCTAAAAAAGAGTTAGGTAAAAATGAAGTGACATTTTCAATGAACACAGAAGATACACCAGATGCAAAAATATCTGCTGAATATATc > 1:3255417/1‑100 (MQ=255) gcACTGGGACAAAGCTAAAAAAGAGTTAGGTAAAAATGAAGTGACATTTTCAATGAACACAGAAGATACACCAGATGCAAAAATATCTGCTGAATATATc > 1:3802050/1‑100 (MQ=255) | ACACTAACAGCCAAAGGAATTGCGAAAGCGCCTAATGGCAAAGATTATGCGAGTACCATGAATTCGCCTTTAAAATATAATCCTAAAGAAGCAAGAGCGCACTGGGACAAAGCTAAAAAAGAGTTAGGTAAAAATGAAGTGACATTTTCAATGAACACAGAAGATACACCAGATGCAAAAATATCTGCTGAATATATC > NC_007793/979193‑979390 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |