Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	906,507	A→C	T6T (ACA→ACC)	SAUSA300_RS04455 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	906,507	0	A	C	100.0%	41.6 / NA	17	T6T (ACA→ACC)	SAUSA300_RS04455	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (13/4);  total (13/4)

GCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACAAATTTAATCAAACGAAAACATCAAGC‑TG‑AAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTG  >  NC_007793/906411‑906587                                                                                                 |                                                                                   gCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAAt                                                                                 >  1:581552/1‑100 (MQ=255)                          cacaAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGC‑Tg                                                       <  1:4937010/100‑1 (MQ=255)                           acaAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGC‑TG‑a                                                     <  1:1850076/100‑1 (MQ=255)                            caAAAACACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTAATTTACCAATTTAATCAAACGAAAACATCAAGC‑TG‑aa                                                    <  1:3658322/100‑1 (MQ=255)                                       gcacCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGC‑TG‑AAGATCggaagag                                         >  1:3929405/1‑94 (MQ=255)                                         gcccccAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGC‑CA‑AAGATCggaagagca                                       >  1:1065707/2‑92 (MQ=255)                                         acCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCATA‑AAGATCggaagagc                                        >  1:1007511/1‑93 (MQ=255)                                          cccccAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCATGC‑TG‑AAGATCggaagagcac                                      >  1:4309902/1‑91 (MQ=255)                                          cccccAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAGGC‑TG‑AAGATCggaagagcac                                      >  1:1361865/1‑91 (MQ=255)                                          cccccAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAGGC‑CG‑AAGATCgaagagcaca                                      >  1:224081/1‑91 (MQ=255)                                          cccccAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGC‑TG‑AAGATCggaagagcac                                      >  1:611181/1‑91 (MQ=255)                                           ccccAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGC‑TG‑AAGATCggaagagcaca                                     >  1:3188037/1‑90 (MQ=255)                                            cccAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGC‑TGAAAGATCggaagagcaca                                     >  1:5639845/1‑90 (MQ=255)                                                                 ggCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGC‑TG‑AAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCaaa               >  1:5097201/2‑100 (MQ=255)                                                                  gCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGC‑TG‑AAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAAc              >  1:1478148/1‑100 (MQ=255)                                                                  gCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGC‑TG‑AAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAAc              >  1:5206647/1‑100 (MQ=255)                                                                              gATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGC‑TG‑AAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTg  <  1:5704664/100‑1 (MQ=255)                                                                                                 |                                                                                   GCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACAAATTTAATCAAACGAAAACATCAAGC‑TG‑AAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCGCTG  >  NC_007793/906411‑906587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑